MidgeBase gene description page [Pn.04936]
Outline
| Gene ID | Pn.04936 |
| Type | Protein coding gene |
| Scaffold | PnScaf4245 |
| Start | 6768 |
| End | 7725 |
| Direction | - |
Sequence
Transcript: 726 (bp)
ATGAAAATTTGTATTGTGTTGGTTCTCGTGGCGATTACGTTGGCGAAGGCTAGAATAATCATTGTGGGAGGTAGAGATGCCGACATCACCGAAGTTCCATGGACTGTGTCCTTGCAGCTAAGGCAGGAAAACAAACCACCGTATCATTTCTGCGGAGGTTCAATTATTTCCTCAAAACATGTTTTGACTGCTGCCCACTGTGGCTATAAGTCATCGGGTGGCATTTTGAACGACGTGGTAAAGATTAACCGTCATCCGCACTACAGCAGACGCAGAACGAATTTTGACTACGCAGTACTGAGCGTTTCTGAAGAGTTTGACGTCAGTGATGGAACCACAGAGATCATTGAAATGGCTCGTTCGGATCCTCCAGAACATGCCATGGCAATCGTTGATGGATGGGGCAATCTTGAGGAGAACGGAACGGAGAGTGAACAGCTTCAATTAATAAATGTCCCAATAAACCGCAGACAGGATTGTGTCAGCATGTATCCGCTGTTTATAACTCGAAATAATTTTTGTGCTGGCTACGTTGTGCCATCGAAAGATGCTTGTCAAGGAGACTCGGGAGGTCCGTTGGTCATCAAGAGTGGTATGAATAATAAACCGATTTTATATGGGATTGTAAGTTCTGGGAGAGGATGTGCTCGCACAGGAGCTGTCGGGATATATGCTAGTGTTTCGGCTCAAATCAGCTGGATAGAGCAAATTATCACATCATTGAAT
Protein: 242 (aa)
MKICIVLVLVAITLAKARIIIVGGRDADITEVPWTVSLQLRQENKPPYHFCGGSIISSKHVLTAAHCGYKSSGGILNDVVKINRHPHYSRRRTNFDYAVLSVSEEFDVSDGTTEIIEMARSDPPEHAMAIVDGWGNLEENGTESEQLQLINVPINRRQDCVSMYPLFITRNNFCAGYVVPSKDACQGDSGGPLVIKSGMNNKPILYGIVSSGRGCARTGAVGIYASVSAQISWIEQIITSLN
| Type | Start | End | Length |
| CDS |
6771 |
6949 |
179 |
| CDS |
7012 |
7163 |
152 |
| CDS |
7220 |
7411 |
192 |
| CDS |
7523 |
7725 |
203 |
| intron |
6950 |
7011 |
62 |
| intron |
7164 |
7219 |
56 |
| intron |
7412 |
7522 |
111 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAV84270 |
serine protease [Culicoides sonorensis] |
2e-35 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF03761.10 |
Domain of unknown function (DUF316) |
0.0003 |
| Pfam |
PF13365.1 |
Trypsin-like peptidase domain |
0.039 |
| Pfam |
PF00089.21 |
Trypsin |
5.4e-49 |
| Pfam |
PF13418.1 |
Galactose oxidase, central domain |
0.12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes