MidgeBase gene description page [Pn.04931]
Outline
| Gene ID | Pn.04931 |
| Type | Protein coding gene |
| Scaffold | PnScaf4235 |
| Start | 53710 |
| End | 55601 |
| Direction | - |
Sequence
Transcript: 1266 (bp)
ATGAACGTAAACTTATATCACGAGACTGGTGTCATAGAAGCAAATTCTGTCGAACATTCTGTCGATTTACATAATGCTTTAATACCAGTTAGCGCCACCAACACTGTAAATTGTAATAGTAGTTCAAATACTAACACTAACTTGAGTAGCAATGCTCAACAATCTAACGGTGGTAGCTCATCAGGTAGATCCACGCCAAATAACGCAAATGACACGGCACCTGGTAAACTTTTTGTTGGTGGACTTAGTTGGCAGACTTCTAGCGAAAAGCTTCGCGAATATTTCGGAATGTTTGGAACCGTAACGGATGTTTTAATCATGAAGGATCCAATAACACAAAGAAGCAGAGGCTTTGGGTTCATCACTTTTACGGAGCCTGATGCAGTTGAGAAGGTTCTCAAAGTCCCGATTCATACGTTAGATGGCAAGAAAATTGACCCGAAGCATGCAACACCAAAGAATCGTCCGAAAGCTGCCAACAAGACCAAAAAGATCTTCGTTGGTGGCGTTTCGCAGGATACAAGCGTGGATGAAGTCAAAGCTTATTTTAGCCAGTTTGGAAAAGTTGAAGAGGCCGTGATGCTTATGGATCAACAGACGAAACGTCATCGGGGCTTTGGATTTATTACGCTGGCTGATGAGGATGTTGTTGATCGGATTTGTGAAATTCATTTTCACACAATCAAGAACAAGAAGGTCGAGTGCAAGAAAGCTCAGCCGAAGGAGACAGTTACGCCAGCGACTCAGCTGCAGCTACAGAAACGCTTGCTTTTGAGTGGCCTCGGACTTCGAATGCCAACCGCAGTTGTAGGAGCAGCAAATCCACACGCGCCCGCAAATGTGATGCAAACTCCACTCTCTGCATATCCTTTGGCGGCTGCCGCCGCTGCTCAAGCTCAAGCTGCTGCTACAATGGTACCGAATCCTCACCACCATCATCATCATCATCATCTTACAAACACAGCAGCTGCAGTTGCCGCTTCAAACTCGGGAGGGAAATTGATTGCTACATATCCGCCATCATTTCATGCGCTGAGATATACACCATATCCACACATGACTCAAACAATTCCGACGGCAGCGACCACAATGTCTCAACTGACTTCAGCGCCCACGCCAAGTCATCAACAACCTCAAAATCCTCAGCTCGCAGCAGCAGCAGCAGTTGCTAATGCAAATCCATATCCAAGCGGCTATAATCTTGCTGGTGTTGACATGTCGAGTTTTAATGGAATCGATTGGTCGTCGATGTATGGCATGTACGTA
Protein: 422 (aa)
MNVNLYHETGVIEANSVEHSVDLHNALIPVSATNTVNCNSSSNTNTNLSSNAQQSNGGSSSGRSTPNNANDTAPGKLFVGGLSWQTSSEKLREYFGMFGTVTDVLIMKDPITQRSRGFGFITFTEPDAVEKVLKVPIHTLDGKKIDPKHATPKNRPKAANKTKKIFVGGVSQDTSVDEVKAYFSQFGKVEEAVMLMDQQTKRHRGFGFITLADEDVVDRICEIHFHTIKNKKVECKKAQPKETVTPATQLQLQKRLLLSGLGLRMPTAVVGAANPHAPANVMQTPLSAYPLAAAAAAQAQAAATMVPNPHHHHHHHHLTNTAAAVAASNSGGKLIATYPPSFHALRYTPYPHMTQTIPTAATTMSQLTSAPTPSHQQPQNPQLAAAAAVANANPYPSGYNLAGVDMSSFNGIDWSSMYGMYV
| Type | Start | End | Length |
| CDS |
53713 |
53941 |
229 |
| CDS |
54009 |
54151 |
143 |
| CDS |
54218 |
54471 |
254 |
| CDS |
54564 |
54831 |
268 |
| CDS |
54899 |
54931 |
33 |
| CDS |
55136 |
55448 |
313 |
| CDS |
55576 |
55601 |
26 |
| intron |
53942 |
54008 |
67 |
| intron |
54152 |
54217 |
66 |
| intron |
54472 |
54563 |
92 |
| intron |
54832 |
54898 |
67 |
| intron |
54932 |
55135 |
204 |
| intron |
55449 |
55575 |
127 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651782 |
heterogeneous nuclear ribonucleoprotein [Aedes aegypti] gb|EAT42400.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti] |
1e-121 |
| InterPro |
IPR000504 |
RNA recognition motif domain |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00076.17 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
6.1e-35 |
| Pfam |
PF07292.8 |
Nmi/IFP 35 domain (NID) |
0.048 |
| Pfam |
PF13893.1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
2.3e-10 |
| Pfam |
PF00313.17 |
'Cold-shock' DNA-binding domain |
0.088 |
| Pfam |
PF08777.6 |
RNA binding motif |
0.031 |
| Pfam |
PF14259.1 |
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
2e-33 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10500 |
| Pn.10498 |
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC004519 |
| N. vitripennis |
NV11198-PA |
| D. melanogaster |
FBgn0260943 |
| T. castaneum |
TC016295 |
| A. aegypti |
AAEL000729 |
| H. sapiens |
ENSP00000284073 |
| H. sapiens |
ENSP00000462264 |
| C. quinquefasciatus |
CPIJ006948 |
| A. mellifera |
GB16625-PA |
| B. mori |
BGIBMGA009577-TA |
| A. mellifera |
GB18853-PA |
| S. invicta |
SI2.2.0_80273 |
| N. vitripennis |
NV10828-PA |
| N. vitripennis |
NV11199-PA |
| A. aegypti |
AAEL006057 |
| H. sapiens |
ENSP00000313616 |
| D. plexippus |
DPOGS211059PA |
| A. gambiae |
AGAP006656 |
| D. plexippus |
DPOGS213039PA |
| H. sapiens |
ENSP00000257552 |
| H. sapiens |
ENSP00000414671 |
| P. vanderplanki |
Pv.02890 |
| P. humanus |
PHUM361200-PA |
| H. melpomene |
HMEL004432-PA |
| P. humanus |
PHUM013780-PA |
| H. melpomene |
HMEL005867-PA |
| P. vanderplanki |
Pv.02542 |
| A. gambiae |
AGAP001993 |
| D. melanogaster |
FBgn0011666 |
| C. quinquefasciatus |
CPIJ003052 |
| M. musculus |
ENSMUSG00000054256 |
| B. mori |
BGIBMGA006950-TA |