MidgeBase gene description page [Pn.04930]
Outline
| Gene ID | Pn.04930 |
| Type | Protein coding gene |
| Scaffold | PnScaf4235 |
| Start | 43019 |
| End | 43904 |
| Direction | + |
Sequence
Transcript: 603 (bp)
ATGGGAGACGGAAATAATCGAGATAAGGGTGAGGAGGAGAGACACGAGCGAGAGAGTCAATTGATTGCTGACGATAAGGATCAGTACGGCAATGAGGTTCAAAAAATGGCTCGTCCTCTACCAGTTGAATATCTCCTTGTTGATGTCCCAGCTTCATCACCGCTAGTTCCTCTCTTTACATTCCCTTCGAGACAAAATCATTTTCCTATTGAGAATAGGCTCTTGGACACCCACTTGCAGGACTTTGCAACTCTTCACAATTATTTGCAGGCGTATCCTCCACAACAATTTCTCTTGGCAATGTCGGATTTTCATGTTTTGCTTTATCTCTATGGTACGTCATGCTTCGATATTAAATTGAAAAGTCAAATGGGGCCGCTTCTTCAAGCGGTGAAAAATCAAGACGCGGCTTTAGCCAAGGAATTTATGCGATGTGACGTCTGGCGAACCTTTGAACAGCTGATTAGTGCTCATGTCCACGACAACGATAATCATATGGCAACTGAAAAAATCGATGCAAGTGGCAGCGACTGGACCTGCAACCACTGTACGTTCATCAACAGCAACGACCTGCAGGCTTGTGAAATGTGCGGATTGCCACGT
Protein: 201 (aa)
MGDGNNRDKGEEERHERESQLIADDKDQYGNEVQKMARPLPVEYLLVDVPASSPLVPLFTFPSRQNHFPIENRLLDTHLQDFATLHNYLQAYPPQQFLLAMSDFHVLLYLYGTSCFDIKLKSQMGPLLQAVKNQDAALAKEFMRCDVWRTFEQLISAHVHDNDNHMATEKIDASGSDWTCNHCTFINSNDLQACEMCGLPR
| Type | Start | End | Length |
| CDS |
43019 |
43090 |
72 |
| CDS |
43207 |
43431 |
225 |
| CDS |
43500 |
43684 |
185 |
| CDS |
43781 |
43901 |
121 |
| intron |
43091 |
43206 |
116 |
| intron |
43432 |
43499 |
68 |
| intron |
43685 |
43780 |
96 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001849000 |
nuclear protein localization 4 [Culex quinquefasciatus] gb|EDS29496.1| nuclear protein localization 4 [Culex quinquefasciatus] |
1e-51 |
| InterPro |
IPR007717 |
Nuclear pore localisation protein NPL4 |
|
| InterPro |
IPR001876 |
Zinc finger, RanBP2-type |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF05021.10 |
NPL4 family |
6.9e-30 |
| Pfam |
PF00641.13 |
Zn-finger in Ran binding protein and others |
1.1e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC005938 |
| P. vanderplanki |
Pv.02541 |
| S. invicta |
SI2.2.0_06445 |
| C. quinquefasciatus |
CPIJ006953 |