MidgeBase gene description page [Pn.04928]
Outline
| Gene ID | Pn.04928 |
| Type | Protein coding gene |
| Scaffold | PnScaf4235 |
| Start | 33565 |
| End | 35628 |
| Direction | + |
Sequence
Transcript: 1326 (bp)
ATGTCTGAAGAAATAATTATACGTATTCAAACGCCAGATGGACTGAAAAGAGTTACAATTTCGAAGAAGGCGTCCCTAAAGGAGCTCTACGAGATGGTTTACAAGTCGCTCAATTTGATTGATTACGGATTTTCTTTGTTCTCAGATCGCGGATGCTCCAATGAGATCCGATCTACTCGCTCTTCGACTCTCTCGAGCTCGTCGCTCAATCACGGCGACATCGTTTACTATAAGCATATGGCTGGAACATCTTCGCAGTCTGATCAGTCCGCGTCGTCTTCGTCGTCATCAAGCAAATCGCAAACGCCGTCGGCCGTGAAGAAAAACTTGCTCGCAGAGGATGCAGTTGATTTGGAGCTAGCAAAACTTGACGGACGGATTGAACGAAAGAGGGATGAAAAGTTGTGCAGACATGCGATTGGAAATAGATGCGTTCATTGCTCTTCACTCGAACCCTACGACGAGAGCTACTTAAAAGAGCAAAAAATTAAGCATCTCTCGTTTCACTCATACTTAAGAAAGATGACATCTGGCATTGACCGCGGCAAATTTGTGGCGTTCGAAGACATTAACTGCAAAATCAAATCTGGTTGTCGAGAGCACCCGCCGTGGCCGAAAGGCATTTGCTCAAAGTGTCAACCCTCTGCGATCACCTTGAATCGTCAAATATATCGTCATGTGGACAATGTGATGTTTGAGAACAACGGAATCGTTGACGAGTTCATCAACTATTGGCGAACGACAAGTCACCAGCGACTCGGATTCTTATACGGTTGCTATGAAAAGACCAATGATGTTCCTTTGGGCATACGAGCAAGAGTTTGCGCTATTTACGAGCCTCCTCAGGAGAGCACAAAGAGCAGCATCAAACTACTCGACGACCCAAACGATGCTGATGTCGAGGAGATGGCAGAGCAACTCGGACTGAAAAGAATTGGCTGGATATTCACCGACTTGGAGGCAATTAATGACGGCAAGGTTAAGCATCTTCGAGGAATCGACAGCTTCTTTTTGACTGCTAAGGAATGCATTCTCGCTGGCCATTTTCAAAATCTGCATCCAAACCCATGCAGTCAGTCGTCAAATGGCTTCTTTGGGTCAAAGTTTGTTACAATCTGCGTGACAGGCGATAAAGAAAATCAGATTCATATGGAGGGATATCAAGTCTCGAATCAGTGCATGGCTCTCGTTCGTGACAACTGCTTGTTGCCGACTAAAGATGCGCCCGAATTAGGATACGTCCGTGAGTCTACTGACAAACAATATGTGCCGGATGTTTTTTACAAGTTGCACTCGAGAAACTTATATGACTCTTTTCGATTCAAG
Protein: 442 (aa)
MSEEIIIRIQTPDGLKRVTISKKASLKELYEMVYKSLNLIDYGFSLFSDRGCSNEIRSTRSSTLSSSSLNHGDIVYYKHMAGTSSQSDQSASSSSSSSKSQTPSAVKKNLLAEDAVDLELAKLDGRIERKRDEKLCRHAIGNRCVHCSSLEPYDESYLKEQKIKHLSFHSYLRKMTSGIDRGKFVAFEDINCKIKSGCREHPPWPKGICSKCQPSAITLNRQIYRHVDNVMFENNGIVDEFINYWRTTSHQRLGFLYGCYEKTNDVPLGIRARVCAIYEPPQESTKSSIKLLDDPNDADVEEMAEQLGLKRIGWIFTDLEAINDGKVKHLRGIDSFFLTAKECILAGHFQNLHPNPCSQSSNGFFGSKFVTICVTGDKENQIHMEGYQVSNQCMALVRDNCLLPTKDAPELGYVRESTDKQYVPDVFYKLHSRNLYDSFRFK
| Type | Start | End | Length |
| CDS |
33565 |
33579 |
15 |
| CDS |
33893 |
34129 |
237 |
| CDS |
34207 |
35080 |
874 |
| CDS |
35147 |
35307 |
161 |
| CDS |
35587 |
35625 |
39 |
| intron |
33580 |
33892 |
313 |
| intron |
34130 |
34206 |
77 |
| intron |
35081 |
35146 |
66 |
| intron |
35308 |
35586 |
279 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651776 |
nuclear protein localization [Aedes aegypti] gb|EAT42394.1| nuclear protein localization [Aedes aegypti] |
1e-174 |
| InterPro |
IPR024682 |
Nuclear pore localisation protein Npl4, ubiquitin-like domain |
|
| InterPro |
IPR007716 |
NPL4, zinc-binding putative |
|
| InterPro |
IPR007717 |
Nuclear pore localisation protein NPL4 |
|
| Pfam |
PF05021.10 |
NPL4 family |
4.6e-72 |
| Pfam |
PF11543.3 |
Nuclear pore localisation protein NPL4 |
3.1e-23 |
| Pfam |
PF05020.10 |
NPL4 family, putative zinc binding region |
5.1e-57 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV13616-PA |
| M. musculus |
ENSMUSG00000039703 |
| H. melpomene |
HMEL014978-PA |
| B. mori |
BGIBMGA003961-TA |
| P. vanderplanki |
Pv.02539 |
| T. castaneum |
TC005937 |
| H. sapiens |
ENSP00000446199 |
| D. melanogaster |
FBgn0039348 |
| S. invicta |
SI2.2.0_14355 |
| D. plexippus |
DPOGS201164PA |
| C. quinquefasciatus |
CPIJ006955 |
| A. mellifera |
GB11261-PA |
| A. aegypti |
AAEL006056 |
| A. gambiae |
AGAP001986 |
| H. sapiens |
ENSP00000363879 |
| H. sapiens |
ENSP00000331487 |
| P. humanus |
PHUM133850-PA |