MidgeBase gene description page [Pn.04925]
Outline
| Gene ID | Pn.04925 |
| Type | Protein coding gene |
| Scaffold | PnScaf4235 |
| Start | 403 |
| End | 4973 |
| Direction | + |
Sequence
Transcript: 2826 (bp)
ATGTCCCAGAACGATTATCGATACATGTCATATCACGATTTATTGACAACTGCCAGCAGATACTACGATCAGAATGTGACCACCTATTCGCGTTTCCATTTTGATGAGAGCAAAAACCTAATGTTTGTCGGTGCAAGAGATCGAATTTATCGGTTCTCGCTGCAACTCGACCTCATGCAAACGACGAGTTGGGAAGTGCCGATCGAAGCGGCAAACACTTGTTTGCTAAAGGGCCAGAGCGACATCGATTGCCGCAACTACATCATGTCGATTCACGCCGTCAACAATAGACTGTTTGTGTGCGGCAGCTATGCCTTTTCGCCGCGCTGCTCGTGGAGAAAGACTGATACGCTCGAGATGATAAAAGACGAAAACGGAGCGGGAAAATGCCCGTTTAGTCCGCGCTCGAACATCACTACGCTGGTGACGGGCGACGGCAAGATGTTTATCGGGTCGACGATCGATTTTTCCGGTTCGGACTCGGTCGTTGCTCGCATTCCGCTGCGAGCTGACCACCAGACGACAGACAACTCGAAAATTCTCCGAACGCGCCAATATAACGATCTGGAGCTGTTCAGTCCGCAATTCGTGGGCAGCTTCGAGCACGGTGAATTCATTTACTTCGTTTTTCGCGAGGCGTCGATCGAAATGGCCAGTTTTGGAGAGAAAGCAATTTACTCGCGGATTGGGCGCGTGTGCAAGAACGACTCAGGTGGATTTCATTATTACAAAGACAATTGGACGTCGTTCCTGAAGGCGCGACTGAATTGCTCGCTGAGCGGCGCCGAGAGTCCTTTTTATTTCGACGAGGTGCAGGACATCACATTTATGCCCAGCGAGAACGAGCTCTACGCCACCTTCTCGACACCCGACAACGCCATTCAGGGTTCGGCGATTTGTGTCTTCAAAATGAGCACTATCGAGGAGGCTTTCAACGGACCCGTGAAGTATCAAGTGTCGCACGGCTCTCCCGTGTGGCAACAAATGGAAATTGAAAACCGAGACCAGTTCGAGTGCCGCTCCTCGCAGCGACCGTCGCACTTTGACACCTCAAAGTATCAGCTGATGGCGAGGTCCGTTCAACAGAGCACGCCCGATCCCCTCTACGTGGAGAAGCTCGAGAAGTTCACTCACATTGCAGTGACCAAAGTCGCGACGAAGCTCCACGAAAACGTCAAAATCATCTTTGTCGCGAATCGCGACGGATTCATCAAGAAAGTGACTGTGCTGCCACGCACCAAGCAGTCTTGCCTCATCGAAGTGCTCGAGCCCGAGTATGTTGGCATCCAGATTGAGACGATGAAATTCATCAAGTCAACCGAGTCACTCTACGTCGGCACCAAAGAGTCGATTATGAAAATTCCATCGCAGCACTGTTCGCGCCACGTGTCAAAAGTCTCGTGCATCAACTCGATGGATCCTTACTGCGGATGGAATGACTTGACACTGACGTGCGGCATGGCACCGAATGGCAACTCGCTGACAACCTACTGGTACCAAAACGCCACCACGTGTCCAATTCTCTCGAGTCCGGTCGATGGCGCCTGGTCGAGCTGGTCAAACTGGTTCAAGTGCGCCAAGTCCGATCCCTCCGGCGCCTACAGCGAGACCGATCTGGCCAAGGGCGATGTCGACACTTGTCTTTGCAGAACCAGAACCTGCGACAATCCCGCGCCGAAGTATGGAGGAAAGAAATGCGAAGGCCACTCAATAATGGTAACCAATTGCACCGAGCATGGCGGTTGGAGTGACTGGAGTTCGTACGGGCCATGCAGTCAGACGTGCGGTGTAGCAATAAAAGTCCGAAGACGAACGTGCAGCAATCCCGCACCGAAGCACAATGGCAGGCTCTGTATCGGGAGCAACCAGCAAGAGATTTATTGCACTGATCTTCCGCCTTGTCCGACGACAAACATCAACATGCAAATCGACGGAGGCTGGTCCGAGTGGAACGAGTGGTCGCCGTGCTCGGCGCCCTGCGATGGCGGCTTCCGCGTTCGGCGGCGATCGTGCAACAATCCCTCGCCGCAAAACAACGGCCTCGAGTGCATCGGCTGCAACTTGGAGTACGAGGAGTGCAACAAACAGCCGTGCAACGAGGTTAAGAAGCTCACGTCGTGGACCAACTGGCTCGTGTCCAACAGCTCCGAAAACGGCCTCTACTTCGAGAAGCGCTATCGCTACATGTGCAAGGCACAAATTCGAGATCCCGCCGATCTGAAAATTCAACTCTACAAGGAGGAGACGCGAGCGTGCAGTGCAAACGACGCGAAATGCCGTCGAGTGAATGTCACTTGCGAGCCGACGACATGCGACCCTCCACGAGACTGCACCGAGCTCGTCGAAGAGGAGGCTAGGAAGTGCAAGAACGCCTTCCAATCGGACGCTCCGCCACGCGTCGCGAGTGCTTCTCTCGAATTCCATTGGATCGCGATAACCTCGATGGTGTTCGCGCTCGTCTGCATCATCGCCACGTTCCTCACCACGAAGTGGTTTGTGGAGAGGAAAATCCACCGATTGCGATCGATTCAGGGCTCGCCGCACTATCTCTCGTCGTATCCCAATCAGTACTCGAGCCTGCCGACAAAAGACTACAGTGAAAACAACAAGCCAAAACGACAGCCATCCTTCAGTGGCACCAGCACCATGGGTCGCTCAAAAGTCACGAACGGAACGCTAAGCAAATCAAACAACAATTTGATGAATCAAAACACGCCAAAAATATTAAAATATCAAAACGACACTGAGATGTCGACGCTGAAGCGCAACTCTCATGCGCTCAACAACTTGCGCCTGAAGCAAATCGAAGACGACAAAGACAAGTAC
Protein: 942 (aa)
MSQNDYRYMSYHDLLTTASRYYDQNVTTYSRFHFDESKNLMFVGARDRIYRFSLQLDLMQTTSWEVPIEAANTCLLKGQSDIDCRNYIMSIHAVNNRLFVCGSYAFSPRCSWRKTDTLEMIKDENGAGKCPFSPRSNITTLVTGDGKMFIGSTIDFSGSDSVVARIPLRADHQTTDNSKILRTRQYNDLELFSPQFVGSFEHGEFIYFVFREASIEMASFGEKAIYSRIGRVCKNDSGGFHYYKDNWTSFLKARLNCSLSGAESPFYFDEVQDITFMPSENELYATFSTPDNAIQGSAICVFKMSTIEEAFNGPVKYQVSHGSPVWQQMEIENRDQFECRSSQRPSHFDTSKYQLMARSVQQSTPDPLYVEKLEKFTHIAVTKVATKLHENVKIIFVANRDGFIKKVTVLPRTKQSCLIEVLEPEYVGIQIETMKFIKSTESLYVGTKESIMKIPSQHCSRHVSKVSCINSMDPYCGWNDLTLTCGMAPNGNSLTTYWYQNATTCPILSSPVDGAWSSWSNWFKCAKSDPSGAYSETDLAKGDVDTCLCRTRTCDNPAPKYGGKKCEGHSIMVTNCTEHGGWSDWSSYGPCSQTCGVAIKVRRRTCSNPAPKHNGRLCIGSNQQEIYCTDLPPCPTTNINMQIDGGWSEWNEWSPCSAPCDGGFRVRRRSCNNPSPQNNGLECIGCNLEYEECNKQPCNEVKKLTSWTNWLVSNSSENGLYFEKRYRYMCKAQIRDPADLKIQLYKEETRACSANDAKCRRVNVTCEPTTCDPPRDCTELVEEEARKCKNAFQSDAPPRVASASLEFHWIAITSMVFALVCIIATFLTTKWFVERKIHRLRSIQGSPHYLSSYPNQYSSLPTKDYSENNKPKRQPSFSGTSTMGRSKVTNGTLSKSNNNLMNQNTPKILKYQNDTEMSTLKRNSHALNNLRLKQIEDDKDKY
| Type | Start | End | Length |
| CDS |
403 |
439 |
37 |
| CDS |
560 |
659 |
100 |
| CDS |
1482 |
2109 |
628 |
| CDS |
2183 |
2289 |
107 |
| CDS |
2482 |
3033 |
552 |
| CDS |
3119 |
3187 |
69 |
| CDS |
3258 |
3436 |
179 |
| CDS |
3540 |
3714 |
175 |
| CDS |
3927 |
4396 |
470 |
| CDS |
4462 |
4970 |
509 |
| intron |
440 |
559 |
120 |
| intron |
660 |
1481 |
822 |
| intron |
2110 |
2182 |
73 |
| intron |
2290 |
2481 |
192 |
| intron |
3034 |
3118 |
85 |
| intron |
3188 |
3257 |
70 |
| intron |
3437 |
3539 |
103 |
| intron |
3715 |
3926 |
212 |
| intron |
4397 |
4461 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312521 |
AGAP002424-PA [Anopheles gambiae str. PEST] gb|EAA07529.5| AGAP002424-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR000884 |
Thrombospondin, type 1 repeat |
|
| InterPro |
IPR002165 |
Plexin |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR016201 |
Plexin-like fold |
|
| InterPro |
IPR001627 |
Semaphorin/CD100 antigen |
|
| Gene Ontology(BP) |
GO:0007275 |
multicellular organismal development |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004872 |
receptor activity |
|
| Pfam |
PF07180.6 |
Protein of unknown function (DUF1401) |
0.023 |
| Pfam |
PF01403.14 |
Sema domain |
5.6e-95 |
| Pfam |
PF00090.14 |
Thrombospondin type 1 domain |
6.6e-16 |
| Pfam |
PF01437.20 |
Plexin repeat |
5.5e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC001449 |
| P. vanderplanki |
Pv.02536 |
| D. melanogaster |
FBgn0250876 |
| P. humanus |
PHUM361010-PA |
| H. sapiens |
ENSP00000371936 |
| C. quinquefasciatus |
CPIJ012360 |
| A. gambiae |
AGAP002424 |
| M. musculus |
ENSMUSG00000022231 |
| D. plexippus |
DPOGS208188PA |
| A. aegypti |
AAEL007804 |
| H. sapiens |
ENSP00000417570 |
| H. sapiens |
ENSP00000389588 |
| B. mori |
BGIBMGA010124-TA |
| S. invicta |
SI2.2.0_00893 |
| H. sapiens |
ENSP00000421961 |
| H. melpomene |
HMEL015712-PA |
| N. vitripennis |
NV16327-PA |
| H. sapiens |
ENSP00000350215 |
| H. sapiens |
ENSP00000195173 |
| A. mellifera |
GB11625-PA |
| H. sapiens |
ENSP00000377208 |