MidgeBase gene description page [Pn.04900]
Outline
| Gene ID | Pn.04900 |
| Type | Protein coding gene |
| Scaffold | PnScaf4219 |
| Start | 494 |
| End | 5837 |
| Direction | - |
Sequence
Transcript: 1059 (bp)
ATGCGAAGCACAATGGATACATCCATAATTTTCGCTAACGACTCGTGGCCAAATTCGGAGGTACTGCCGGCCGACTCAAACGACACGGAACTCATACCAGATGCACTGTCATCGCTCACGATTTGCTTCGTAGGATCATTTCTAGCGCTTCTAATCTTCCTATCAATTGCGGGAAACATTCTCGTGTGTATTGCCATTTATACGGAACGAAGTCTTCGACGTATCGGCAATTTATTTTTGGCATCACTTGCCATTGCCGATTTATTTGTGGCGTCTCTTGTGATGACATTCGCTGGCGTGAATGACATTTTAGGTTATTGGATTTTTGGTGCTAAATTTTGCGATACATGGGTTGCATTTGATGTCATGTGCTCGACAGCATCAATTTTAAATTTATGTGCAATTTCGCTGGATCGATACATTCACATAAAGGATCCATTAAGATACGGTCGATGGGTAACGCGACGCATTGCTGTGGGGACAATTGCTCTCATATGGATACTGGCGGGTTTTGTGTCGTTTGTGCCAATCTCGCTGAACCTGCATCGTCCCGATCAGCCGCTCATGTTCGACAAGGACGGAACTGAATATCCCACGTGCGCACTTGACTTAACGCCAACCTACGCAATTGTATCGAGTTGTATAAGCTTTTATGTTCCATGTATAGTAATGATAGGTATTTATTGTAGACTTTATTGTTATGCCCAGAAGCATGTGCGTTCGATTAGGGCAGTAACAAAGGATCCCGGCGAAATCACCGAGAAGCGCTACCGGAGCATTAGACGCATTAATAAGCCCAACAAGAAGCTGAAAATCCGCAACTTTCACCACTCGTCGCCATATCACGTCTCCGATCACAAGGCGGCCATCACCGTGGGCGTCATCATGGGCGTCTTCCTCGGTAAGATGATCGAACTTTTCAAGAAAGAGACTGTTTACAGCGCCATCTCCTCAAATGCTGTAAACAAACACTCGCTCGCACGTAGTTCAAATAATTTCTGCTGGCTGCGACATGCTCGAGGTCGTGCAATAAGACGGCGATGGTTGGATGACTGGCTG
Protein: 353 (aa)
MRSTMDTSIIFANDSWPNSEVLPADSNDTELIPDALSSLTICFVGSFLALLIFLSIAGNILVCIAIYTERSLRRIGNLFLASLAIADLFVASLVMTFAGVNDILGYWIFGAKFCDTWVAFDVMCSTASILNLCAISLDRYIHIKDPLRYGRWVTRRIAVGTIALIWILAGFVSFVPISLNLHRPDQPLMFDKDGTEYPTCALDLTPTYAIVSSCISFYVPCIVMIGIYCRLYCYAQKHVRSIRAVTKDPGEITEKRYRSIRRINKPNKKLKIRNFHHSSPYHVSDHKAAITVGVIMGVFLGKMIELFKKETVYSAISSNAVNKHSLARSSNNFCWLRHARGRAIRRRWLDDWL
| Type | Start | End | Length |
| CDS |
497 |
532 |
36 |
| CDS |
715 |
1048 |
334 |
| CDS |
1156 |
1401 |
246 |
| CDS |
1829 |
1958 |
130 |
| CDS |
3252 |
3431 |
180 |
| CDS |
3988 |
4102 |
115 |
| CDS |
5820 |
5837 |
18 |
| intron |
533 |
714 |
182 |
| intron |
1049 |
1155 |
107 |
| intron |
1402 |
1828 |
427 |
| intron |
1959 |
3251 |
1293 |
| intron |
3432 |
3987 |
556 |
| intron |
4103 |
5819 |
1717 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002054778 |
GJ22610 [Drosophila virilis] gb|EDW68298.1| GJ22610 [Drosophila virilis] |
1e-130 |
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF10320.4 |
Serpentine type 7TM GPCR chemoreceptor Srsx |
3.5e-07 |
| Pfam |
PF00290.15 |
Tryptophan synthase alpha chain |
0.13 |
| Pfam |
PF10328.4 |
Serpentine type 7TM GPCR chemoreceptor Srx |
5.6e-06 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
3.9e-54 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.13425 |
| Pn.08335 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.02117 |
| M. musculus |
ENSMUSG00000021478 |
| B. mori |
BGIBMGA002277-TA |
| D. plexippus |
DPOGS202585PA |
| N. vitripennis |
NV10767-PA |
| H. sapiens |
ENSP00000327652 |
| H. melpomene |
HMEL003917-PA |
| A. aegypti |
AAEL003920 |
| C. quinquefasciatus |
CPIJ000649 |
| M. musculus |
ENSMUSG00000039358 |
| A. gambiae |
AGAP004613 |
| B. mori |
BGIBMGA002275-TA |
| D. melanogaster |
FBgn0011582 |
| P. humanus |
PHUM434420-PA |
| H. sapiens |
ENSP00000377353 |
| T. castaneum |
TC012447 |
| B. mori |
BGIBMGA002276-TA |
| H. sapiens |
ENSP00000306129 |
| P. vanderplanki |
Pv.17527 |
| C. quinquefasciatus |
CPIJ000647 |
| S. invicta |
SI2.2.0_02156 |