MidgeBase gene description page [Pn.04888]
Outline
| Gene ID | Pn.04888 |
| Type | Protein coding gene |
| Scaffold | PnScaf4205 |
| Start | 53542 |
| End | 56089 |
| Direction | + |
Sequence
Transcript: 1614 (bp)
ATGTCGCCGAATAACGTTTTAGAGTCTGTCGACATGGACATTGACTTGAGCAAGTACATAAGGAAAAAGACCGCGGACGAGCTCCAAATGGACGAGAACAATAATGTCGAAGATTTTTCCAAAAGCCCGCTCATTAAGACCAAGTGTATTAAGGAATATTATGAGAATTGCAACATTTTTGTGACTGGATCTACCGGATTTTTAGGAAAAGTTTTGATTGAGAAACTCCTTCGCTCGTGCGATGGAATTCGTAAAATTTACATTTTGCTGAGGCCGAAGCGAGGCATCGGAAGCGAACAGCGATTCGAAGAGTACTTGCGCAATCCAATTTTCGAGCGAATTCGCAGCAAAAATGCAGACGTCCTGAAGAAGCTCGTGTGCATTCCGGGCGACATCAATGAGCCGAAGCTCGGCCTTGAGGAGCGTGACATTCGCATGCTGCAGCAGAATATTGACATTGTCTTTCACGTGGCCGCGACAGTTCGATTTAATGAGCCGCTCAAAGTCGCTGCCAATCTCAATACGTTCGGTACGCGACGAGTTATGGAGCTGTGCACGAAGATGTCAAAGCTTAAGAGCTTGGTGCACGTCAGCACGGCGTACAGCAATCCGCATTTGAAGGATGTTAACGAGCGAGTTTACGGATCGTCAGCCTCGGCCGATCACCGTCTCTTCGTCAACGGGGTCGGCGTGCTGCCCGATGACTTTGTCGAGACGATCGCGACGCGCTTCAAGAAGCGCCATCCCAACACGTACACGCTGACGAAGCACATGGCCGAGCAGATTGTCCTCGACTACCGCAACGTTCTGCCGCTGTGCATCGTCCGGCCGTCGATCGTCACGGCGGCAATTAGTGAGCCCTACCCGGGATGGATCGACAATGTCTACGGAATTACTGGCGTTCTAATGGAGATTGGGCGCGGCACGATTTCGTCGATTATCGGTTACGAGGACAGTCGCGCCGACCTCATGCCCGTCGACATCGTCTGCAATGCACTGATCATGGCGGGCTGGGCCAACAGCTTCATGCGCACTCCCAACGAGATTACCGTGTTCAACTGCACCTCGGGTCCATTCAATCCGTTTACATACAAGCTGCTGAACAAGTACATCGTGAAGCATGCGCTGATCAACCCGAGCAAGTACATCGCCATGTACCCGCGCTTCGTTTACCGCACCAACCGCTTTATGCACGCGCTCGTGGAAATATTTCTGCAGTTTTTGCCGGCCCTTCTCTTCGACCTGGTCCTCCGCGTGCAAGGAAGGAAGCCGATCATGCTAAAGATTGCAAAACGCGTAAAACTCGCGCACGATACCGGCAAGTACTTTGTGCTCAACGACTGGAACTTCAACTCGGACAATATGAAGCGAATGATGCGTGCAGCGAACGAGACGCAGCTCGATGCCAGCGAGTTCAACTGCGATGTCAGCGGCATGGATTGGGATGCCTACATCGGACGCTACATGATGGGAATCAGGACGTACATCTTGAAGGACGACATCAGCAGCCTCCCGAAAGCGCGACGAAAACTCAAACAGATCTACTTCACGAAGCTCTTCCTCCAGTTTCTCTTGTTTGCTTTCGTTAGCTTTGTTTTTTATGGCATGTGGAAT
Protein: 538 (aa)
MSPNNVLESVDMDIDLSKYIRKKTADELQMDENNNVEDFSKSPLIKTKCIKEYYENCNIFVTGSTGFLGKVLIEKLLRSCDGIRKIYILLRPKRGIGSEQRFEEYLRNPIFERIRSKNADVLKKLVCIPGDINEPKLGLEERDIRMLQQNIDIVFHVAATVRFNEPLKVAANLNTFGTRRVMELCTKMSKLKSLVHVSTAYSNPHLKDVNERVYGSSASADHRLFVNGVGVLPDDFVETIATRFKKRHPNTYTLTKHMAEQIVLDYRNVLPLCIVRPSIVTAAISEPYPGWIDNVYGITGVLMEIGRGTISSIIGYEDSRADLMPVDIVCNALIMAGWANSFMRTPNEITVFNCTSGPFNPFTYKLLNKYIVKHALINPSKYIAMYPRFVYRTNRFMHALVEIFLQFLPALLFDLVLRVQGRKPIMLKIAKRVKLAHDTGKYFVLNDWNFNSDNMKRMMRAANETQLDASEFNCDVSGMDWDAYIGRYMMGIRTYILKDDISSLPKARRKLKQIYFTKLFLQFLLFAFVSFVFYGMWN
| Type | Start | End | Length |
| CDS |
53542 |
53746 |
205 |
| CDS |
54234 |
54604 |
371 |
| CDS |
54672 |
54993 |
322 |
| CDS |
55371 |
56086 |
716 |
| intron |
53747 |
54233 |
487 |
| intron |
54605 |
54671 |
67 |
| intron |
54994 |
55370 |
377 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663993 |
hypothetical protein AaeL_AAEL013802 [Aedes aegypti] gb|EAT33929.1| conserved hypothetical protein [Aedes aegypti] |
1e-165 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
3.2e-11 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
3.1e-10 |
| Pfam |
PF04321.12 |
RmlD substrate binding domain |
0.015 |
| Pfam |
PF03015.14 |
Male sterility protein |
1e-24 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
7.1e-06 |
| Pfam |
PF07993.7 |
Male sterility protein |
2.8e-74 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC015753 |
| D. melanogaster |
FBgn0038751 |
| A. aegypti |
AAEL013802 |
| S. invicta |
SI2.2.0_08733 |
| B. mori |
BGIBMGA011116-TA |
| D. plexippus |
DPOGS210773PA |
| S. invicta |
SI2.2.0_05324 |
| H. melpomene |
HMEL013888-PA |
| C. quinquefasciatus |
CPIJ014976 |
| P. vanderplanki |
Pv.10379 |
| P. humanus |
PHUM536800-PA |
| N. vitripennis |
NV16433-PA |
| S. invicta |
SI2.2.0_03923 |
| A. gambiae |
AGAP009690 |