MidgeBase gene description page [Pn.04871]
Outline
| Gene ID | Pn.04871 |
| Type | Protein coding gene |
| Scaffold | PnScaf4202 |
| Start | 56 |
| End | 2385 |
| Direction | - |
Sequence
Transcript: 1578 (bp)
ATGAACGCCACACAGAGCCTTCTTCTTCTTATTATTATTTCGGGCGCGCTCTGCGAGTTCCGCTACCATCCGCGGCCGACGCGCGAGGAGGTGGAGCAGGCGCGGCCCGGCCTCGACCCCCTCGACATCACGCTCGACGACTTCAGCGAGGTGTGGACGCGGCGTGGCCAGGACTACCTCGCCGACCGCCTCGGCTACCGGCCGAAGAACCGGCGCGCCAAGAACGTCATCATGTTTCTGGGCGACGGCCTCGGCATGGTCACGACGGCCGCCACGCGCATGTACCTCGGCGGCGAGGAGGTGGAGCTCTCGTACGAGAAGTTCCCGCATCTCGGCTTCGTGAAGACCTACTGCGTCGACCGGCAGGTGGCCGACTCCGCGTGCTCCGCGAACGCGTTCTTGCATGGCGTGAAGAACAACTACCAGGGCATCGGCGTGACTGCCGCCGTGCCGAGGACTGCCTGCAACTTTGACGACGCCGACAAGACCTACTCGATCGCCAAGTGGGCGCAAGACGCAGGCAAGGCGACTGGGTTTGTGACCACCACTCGGGTCACGCATGCTACGCCGGCCGGAGCGTACGCGCACAGCCCGCACCGCAGCTGGGAGAACAACGCGGCGATCTCGTCGACGTGCCGCAACGACCCGAACTCGCGCATCGTCGATATCGCGCACCAGCTGGTGTACAACGAGGAGGCGGCGCGCTTCAAGGTGATCCTGGGCTGCGGCCGGCGCGAGTTCCTCAACACGACCGTGCCGGACGAGGAGGGCGTCGCGGGCCGGCGCACGGACGGCCGCAACCTCATCGACGAGTGGCTGGCGGAGCGCAGCCGCGTCGGCCGCGCGCACTTCCTCTGGCACAAGCAGCAGCTGGACGAGCTGGACGTCGCGGACGCCGACTTCGTGCTGGGGCTGTTCGAGAGCGACCACTGCCTGTACCGCAGCGACGTCGTGGACCGGAAGGTGCGCGCGCAGGAGCCGCTGCTCACGGACATGACGCGCAAGGCGATCCAGCTGCTGCAGAAGGAGGAGCACGAGCGCGGCTTCTTCCTGCTGGTCGAGGGCGGCCGCATCGACCACGCGCACCACTCGAACCGCGCGCGCCAGTCCGCCGACGAGACGGCCGAGTTTGCGCGCGCCATCGAGCTCGCGCGCACCCTCACCGACGACGACGACACGCTCATCGTCGTCACGTCCGACCACAGCCACGTGCAGGCATATGCCGGTTATCCGTGGCGTCGCAACGACGTCATGGGCATCGGCGGCCGCGGCGGCGACCTCCTGCCCTACGAGACGCTCTCGTACGCGAACGGGCCGTCGGCGGCGCGCTCCTTCGACGCCGACGGACGACGCGTTGACATCAGCGGCGACGACTTTGCGGCGTCGCGCCGCTCCGCACAGTCGCTGGTGCCGCGCAGCTCCGAGACGCACGCCGGCGAGGACGTCGCCGTCTACGCGACCGGCCCGTGGGCCCATCTCTTCGACGGCAGCTACGAGCAGAGCTTCATTCCCATCGCCATGGCCTACGCCGCACAGATCGGGCCCTACGCCGAGGCCGAGCCCATCATGCCCTTCAAC
Protein: 526 (aa)
MNATQSLLLLIIISGALCEFRYHPRPTREEVEQARPGLDPLDITLDDFSEVWTRRGQDYLADRLGYRPKNRRAKNVIMFLGDGLGMVTTAATRMYLGGEEVELSYEKFPHLGFVKTYCVDRQVADSACSANAFLHGVKNNYQGIGVTAAVPRTACNFDDADKTYSIAKWAQDAGKATGFVTTTRVTHATPAGAYAHSPHRSWENNAAISSTCRNDPNSRIVDIAHQLVYNEEAARFKVILGCGRREFLNTTVPDEEGVAGRRTDGRNLIDEWLAERSRVGRAHFLWHKQQLDELDVADADFVLGLFESDHCLYRSDVVDRKVRAQEPLLTDMTRKAIQLLQKEEHERGFFLLVEGGRIDHAHHSNRARQSADETAEFARAIELARTLTDDDDTLIVVTSDHSHVQAYAGYPWRRNDVMGIGGRGGDLLPYETLSYANGPSAARSFDADGRRVDISGDDFAASRRSAQSLVPRSSETHAGEDVAVYATGPWAHLFDGSYEQSFIPIAMAYAAQIGPYAEAEPIMPFN
| Type | Start | End | Length |
| CDS |
59 |
1072 |
1014 |
| CDS |
1749 |
1924 |
176 |
| CDS |
1998 |
2385 |
388 |
| intron |
1073 |
1748 |
676 |
| intron |
1925 |
1997 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR27952 |
hypothetical protein AND_04784 [Anopheles darlingi] |
1e-131 |
| InterPro |
IPR001952 |
Alkaline phosphatase |
|
| InterPro |
IPR017849 |
Alkaline phosphatase-like, alpha/beta/alpha |
|
| InterPro |
IPR017850 |
Alkaline-phosphatase-like, core domain |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016791 |
phosphatase activity |
|
| Pfam |
PF00245.15 |
Alkaline phosphatase |
1.5e-114 |
| Pfam |
PF01663.17 |
Type I phosphodiesterase / nucleotide pyrophosphatase |
0.0046 |
| Pfam |
PF00884.18 |
Sulfatase |
0.014 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.09386 |
| Pn.09387 |
| Pn.00739 |
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL003313 |
| A. gambiae |
AGAP011305 |
| P. vanderplanki |
Pv.00917 |
| P. vanderplanki |
Pv.00913 |
| D. melanogaster |
FBgn0035619 |
| D. melanogaster |
FBgn0033423 |
| C. quinquefasciatus |
CPIJ001265 |
| P. vanderplanki |
Pv.17345 |
| A. aegypti |
AAEL003289 |
| A. aegypti |
AAEL003309 |
| C. quinquefasciatus |
CPIJ001264 |
| P. vanderplanki |
Pv.00916 |