MidgeBase gene description page [Pn.04856]
Outline
| Gene ID | Pn.04856 |
| Type | Protein coding gene |
| Scaffold | PnScaf4177 |
| Start | 22762 |
| End | 24561 |
| Direction | + |
Sequence
Transcript: 1797 (bp)
ATGGGCGCTCTGATAAAATTCAACGATGCACTTGCCAGTTCGTGCACGAACAAAAATGGCTTTAACATGATTTTCGTCACAGATCCAAAAGCTCACAAGGCGAATGAGGAACTTCGCACAAAATTGGCCAAACATTTCATGAAATATCAAACGGTTCGCGTCATCAACAGTGGAACTTTGGTGACGATTCAACACCGAAATCGATTTAGTTATCTATTAATAGACAACTTCGCCGCGTTCGAGAGCTTTGAAGGTCACATCAACAGAACTTTGTTCAGGACATCCGGCGTTCAATTATTCATCCTGATCCGCGGAGATTCAGACGATTTGAAGAAGATTTTCGAAAGAATGTGGCAGAAGAGGTTTTACAACACTTTCGGCCTGATCGAGGATTCGAACGACGAAAGTGCAAACTTGATGACAATCAGCCCTTTTGAGGATCCACAGAAGTGCGGCGACATGACACCAAAGCTTATCAACAGGTTCAGAGACGGCAAATTCGAGAGCGAGCTTGTTTTTGCGGACAAGTTTCGCAACATGAACAAGTGCCCGGTCAGGCTGACCACTTTCAACGAAAATATCGCGGTAGTGAGGGAAATTCTGCCGAGCGGCTCAGCAACCTACAAAGGTCACGAAATGCATCTCATTCGGGCGATCGAAGCAGGACTGAACTTCACGCTGAAGATGAGGTTTCTCGAGGTGGAGATGGCGTTCGGGACTGTCTTCGACAATGGTACGGTGACGGGAGTTTTGAACGAATTGCAGCGTGGAGAGACGGACATCGTGATGGGCGATTATTTCCTGAAAACGAATCGCTTGAAAATGTTCGACAGCAGCGCGTCCTACTTGAGCTACGAGTCTGTCTTTGTCGTTCCAAAGGGCCAGAAGTTCACGGCCCTCGAGAAGATGCTGCAGCCCTTTGACAAAGCTGTGTGGCTCATGCTTTTGCTTACATTCTTGGTGGGCATTTTTGTGATCTCCGCCATCAGCCGGAAGTTCAAGAGTCTGAAAGTTTTCGTCTTCGGCGAGAAAGTCAGACATCCGATGACAAACATGCTCGTCATTGCGCTCGGCTCGCAGCAGCCAGTTCTGCCACAAGCCAACTTTTCCCGCTTCATCCTCATGATGTTCATCATCTTGTGCCTCGTCATGCGGAGCATCTATCAGGGATTGCTCTTCAAGTTCCTGCAGTTCGACAGCCGGCACCGGGAGGTCGAGAAAATGCAGGAACTCATCGACAATGACTTTGCGGTTCTGATGCCCGAGAACAATCTGGACATTGCCGAGTTCCACCCAGAGCTTTTCAAGAAGGTCATAATTCTCGGCTACCGCTTCAAGAATTATTCCTTTGACGAGTACATGGCCATCGGAGACAAGGTCACAGTCCTCGGAACGCAGGTCCTCTTCATCGAATACAGCCGGATTCAGAGCGTTTTTCCCTACAAGATCTGCAAGGAGCGCTTCATGGCGGTCAACGTTGTGATGTACTTTCAGAAGGACTCGTTTCTGCGCACGCCAATCAACGCGAAGCTGAGGCAGATCATCGCAGCGGGACTCGTGAACTTTTGGCTCAGAGAGTTCGATCGCACAGACCGGTGGAAAAGCAGTGACAATGGACCTCGAGTGCTGACCCTAGAGCACTTGAATGGAGCTTTCGGCCTGCTATTAATCGGTCATTTTCTTGCTGCTCTTGCGTTTGTCGGCGAAATTATCGCGAAAAATGTTTCATCCAAAAAGAAGATTAATGCTTGCAAAGTCATTTTGGACGACAGAAGTGCTCTCGAACCGAGACGAGTA
Protein: 599 (aa)
MGALIKFNDALASSCTNKNGFNMIFVTDPKAHKANEELRTKLAKHFMKYQTVRVINSGTLVTIQHRNRFSYLLIDNFAAFESFEGHINRTLFRTSGVQLFILIRGDSDDLKKIFERMWQKRFYNTFGLIEDSNDESANLMTISPFEDPQKCGDMTPKLINRFRDGKFESELVFADKFRNMNKCPVRLTTFNENIAVVREILPSGSATYKGHEMHLIRAIEAGLNFTLKMRFLEVEMAFGTVFDNGTVTGVLNELQRGETDIVMGDYFLKTNRLKMFDSSASYLSYESVFVVPKGQKFTALEKMLQPFDKAVWLMLLLTFLVGIFVISAISRKFKSLKVFVFGEKVRHPMTNMLVIALGSQQPVLPQANFSRFILMMFIILCLVMRSIYQGLLFKFLQFDSRHREVEKMQELIDNDFAVLMPENNLDIAEFHPELFKKVIILGYRFKNYSFDEYMAIGDKVTVLGTQVLFIEYSRIQSVFPYKICKERFMAVNVVMYFQKDSFLRTPINAKLRQIIAAGLVNFWLREFDRTDRWKSSDNGPRVLTLEHLNGAFGLLLIGHFLAALAFVGEIIAKNVSSKKKINACKVILDDRSALEPRRV
| Type | Start | End | Length |
| CDS |
22762 |
24558 |
1797 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656710 |
hypothetical protein AaeL_AAEL003335 [Aedes aegypti] gb|EAT45392.1| conserved hypothetical protein [Aedes aegypti] |
2e-50 |
| InterPro |
IPR001638 |
Extracellular solute-binding protein, family 3 |
|
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0030288 |
outer membrane-bounded periplasmic space |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
1.6e-07 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
8.9e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05593 |