MidgeBase gene description page [Pn.04855]
Outline
| Gene ID | Pn.04855 |
| Type | Protein coding gene |
| Scaffold | PnScaf4177 |
| Start | 20515 |
| End | 21600 |
| Direction | + |
Sequence
Transcript: 1083 (bp)
ATGAAAGATGTAAAATTCAGAATGAGCCTGCGATCAAAGAGGCAACTTTTGCGGAGATTTCTGCTCACGCTCTCGCTCTTCACGGTCACCGTTTTCTCGATTTTACGGCTCGTGGACCGAGCCAAAGTGAAGCACACGCGAGCGATTCGCACCAACGAGAGCGCAATTTTCTTAGACAATTTATTCGGAACAGACGAGGACGTGCTAGCCGACAGCAGCATCTTCTTCCTCGACACGACCAGAATGCGTCATCCGCAGCACCAGAGAGATCTAACAATGCGACAAATCTGCTCGATTGAGTCGGCGGCCTTGACGAATCCGAGTGCGAGAATTTTCGTGATTATCGTCGCGCCGCAGAAGCTGACGACATCAATCAGATACTTGCCGCGAATGAATGCCCTCCTCGACTACCCGAACGTCTACTTAAAGTCGATGCTGCTGGTGCAGTACACGATAGACACGCCGCTCGAGCGCTTCGTTGCCGACGGCAAGATTTTCGAGTCGAAGTTCATCCGAGCACATACGGCTGACGCACTGCGGCTGCTGCTCCTGTGGAAGTTCGGCGGCACCTATCTCGATACCGACATGATCGTGCGACGCGAACTGTCGGCTCTGCCGGCGAATTTCGTGTGCCGGGACCACGACTTTCTGTGCAACGCGATAATGAGCCTCAAGGGCAAGCGCGGCAGGGAATTCGCCCGCATGTTCATCGACGACTTCATCGAGAAGTTCAATCCGAAGGAGTGGAGCGAAAACGGCCCCTTCATGATCGGCCGGGTGCTCTCGAGACTGTGCAACACCACGAAAGTAAGGGAGATGCACGAGTGCGGGGGCTTTCGCGTCTTGGACGATGACCTGTGCTATCCGGTTACCGGCACCTCGTGGGAGCTGCTGTTCGACGAGGAAAAAGGTGAAAGCCTGCTCAACCTAATGGACGAGTCGGTTGTCGTGCACTTTTGGAATAAGCTCTCGCACATGCAGAAAATCAAGTGCGACTCGAAAGCGGCTTACACGTTGCTAGCGAACCAGTTCTGTCCGAAAACCATGGCCTACTGTGAGGATTACTTTCTGGGCTGGGAAGGC
Protein: 361 (aa)
MKDVKFRMSLRSKRQLLRRFLLTLSLFTVTVFSILRLVDRAKVKHTRAIRTNESAIFLDNLFGTDEDVLADSSIFFLDTTRMRHPQHQRDLTMRQICSIESAALTNPSARIFVIIVAPQKLTTSIRYLPRMNALLDYPNVYLKSMLLVQYTIDTPLERFVADGKIFESKFIRAHTADALRLLLLWKFGGTYLDTDMIVRRELSALPANFVCRDHDFLCNAIMSLKGKRGREFARMFIDDFIEKFNPKEWSENGPFMIGRVLSRLCNTTKVREMHECGGFRVLDDDLCYPVTGTSWELLFDEEKGESLLNLMDESVVVHFWNKLSHMQKIKCDSKAAYTLLANQFCPKTMAYCEDYFLGWEG
| Type | Start | End | Length |
| CDS |
20515 |
21597 |
1083 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002052275 |
GJ17463 [Drosophila virilis] gb|EDW64430.1| GJ17463 [Drosophila virilis] |
4e-48 |
| InterPro |
IPR007652 |
Alpha 1,4-glycosyltransferase domain |
|
| InterPro |
IPR007577 |
Glycosyltransferase, DXD sugar-binding motif |
|
| Gene Ontology(CC) |
GO:0005795 |
Golgi stack |
|
| Gene Ontology(MF) |
GO:0008378 |
galactosyltransferase activity |
|
| Pfam |
PF04488.10 |
Glycosyltransferase sugar-binding region containing DXD motif |
1.4e-11 |
| Pfam |
PF05704.7 |
Capsular polysaccharide synthesis protein |
0.00068 |
| Pfam |
PF04572.7 |
Alpha 1,4-glycosyltransferase conserved region |
7e-35 |
| Pfam |
PF12919.2 |
TcdA/TcdB catalytic glycosyltransferase domain |
0.041 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.15146 |