MidgeBase gene description page [Pn.04811]
Outline
| Gene ID | Pn.04811 |
| Type | Protein coding gene |
| Scaffold | PnScaf4127 |
| Start | 11988 |
| End | 13704 |
| Direction | - |
Sequence
Transcript: 1656 (bp)
ATGGACATCGGGGACCTGCTATCATTTAAACCAGAGCCAGTACCGAAACGCAAACAAAATGAAGAAAACGGCGAAGAAGCTGAAGCTGTTCAATCAGGAGCGAAAAAGCCTAAAATTGACGAAAAAATTTTAAGCGTATTAAATGCGACAGATCCAGAGGATGAAGAAACTCAAATACTAGACGAAAACGGTCTGAAGAAATTGGCGCTGCTGTTTGAAAAGCGTGTACTTAGAAACCAAGTGACACGCTTGAAATATCCTGATCAGCCTGAGCGTTTCATGGATTCGGAAGTTGAGCTTTTCGAAGTGATTCAGCAACTTCGACCAATCGCTTGCGTACCGGATTTGTATCCTATCGCAATTTCACCACTGGGATTGCTCTCCTCGATGCTTGAGCTTTTGAATCATACAAATACAGACATCTCTGCTGCAATTGTCGAAATTCTAAACGAGATGACAGACGTTGATGTAATGAACGAAAGTACAAAAGGAGCCGAACGCTTAATAGTCTTTCTGCGGGAACAAGAAGTTACGAAATTGTTGGTAAACTGTCTTGAGCGCTATAACGAATTGGTCAAAGAAGAGAGCGATGCAGTGCACAACATTTTGGGAATATTCGAAAACATGACTGAACTTAAACCAGAAATGTGTAAAGAAATCGCTGAACAAGGTCTGCTCGCGTGGATTCTCAAGAGAATTAAAGTAAAACAATACGACCCAAATAAGCTGTACTGCTCTGAAATACTATCGATCCTGCTTCAGAATGAGAACGAGAACAGAATTTTGCTTGGCACCTTAGAGGGAATCGATGTATTGCTGCAGCAGCTGGCAGTTTACAAAAAACACGATCCTACCGATGGAGACGAAGAAATTGAATATATGGAAAACATTTTCAACTGCCTCTGTTCGAGTCTGCTTACAAGAGAAAATCGCTTGAATTTTCTTAAAGGCGAGGGATGCCAACTGATGAATTTAATGCTACGTGAAAAAAAATTGTCAAGAAATGGCGCACTGAAAGTGCTTGATTTTGCGCTCTCAACTGCCGATGGCAAAGACAATTGTCAAAAATTTATTGACATTCTCGGCTTGCGAACTATTTTTCCGCTCTTTATGAAACCTCCCAAAAAGAACAAAAAGCGACTGCTTAGTGGAGAAGAATTTGAGGAACATTTGTGCTCCATCATCAGCAGTTTGTTAAGAAACACTAAGGGAAGCCAAAAACAACGACTTCTATCTAAGTTTGTGGAGAATGATTATGAAAAAGTGGATCGTTTAATGGAGCTGCATTTAAAATATTTGGAAAAGGTCGAGATTGTCGATCGCGAAATTGAAAGTCAGAAAAAGTTGAAGGAGCAGGATGAAGAAAGCGATGAAGATGAAGAAGAGGAGCAAGAACAAAACTATTTGAAACGACTAAGTGGTGGCTTATTCACTCTTCAACTGATTGACTATATCATTCTTGAAATAGCAGTTTCGGCAGAAGGCTCTAAAATAAAAGAAAGAATTCAAAAGATTCTAAACCTTAGAGGGTCTTCAATGAAAGTTGTCAAAGAAATTATGCGAGAATATTTGGGAAATCTCGGCAGTTCAAGCACCCAGAGTACAGAATGGCAAGAACAGGAGAAGCGAAATGTTACAAGTTTGATCAATCGATTC
Protein: 552 (aa)
MDIGDLLSFKPEPVPKRKQNEENGEEAEAVQSGAKKPKIDEKILSVLNATDPEDEETQILDENGLKKLALLFEKRVLRNQVTRLKYPDQPERFMDSEVELFEVIQQLRPIACVPDLYPIAISPLGLLSSMLELLNHTNTDISAAIVEILNEMTDVDVMNESTKGAERLIVFLREQEVTKLLVNCLERYNELVKEESDAVHNILGIFENMTELKPEMCKEIAEQGLLAWILKRIKVKQYDPNKLYCSEILSILLQNENENRILLGTLEGIDVLLQQLAVYKKHDPTDGDEEIEYMENIFNCLCSSLLTRENRLNFLKGEGCQLMNLMLREKKLSRNGALKVLDFALSTADGKDNCQKFIDILGLRTIFPLFMKPPKKNKKRLLSGEEFEEHLCSIISSLLRNTKGSQKQRLLSKFVENDYEKVDRLMELHLKYLEKVEIVDREIESQKKLKEQDEESDEDEEEEQEQNYLKRLSGGLFTLQLIDYIILEIAVSAEGSKIKERIQKILNLRGSSMKVVKEIMREYLGNLGSSSTQSTEWQEQEKRNVTSLINRF
| Type | Start | End | Length |
| CDS |
11991 |
12456 |
466 |
| CDS |
12515 |
13704 |
1190 |
| intron |
12457 |
12514 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_649847 |
CG11964 [Drosophila melanogaster] gb|AAF54309.1| CG11964 [Drosophila melanogaster] gb|AAK93367.1| LD41978p [Drosophila melanogaster] gb|ACL90576.1| CG11964-PA [synthetic construct] |
0.0 |
| InterPro |
IPR013180 |
Domain of unknown function DUF1716, eukaryotic |
|
| InterPro |
IPR011989 |
Armadillo-like helical |
|
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
| Pfam |
PF12612.3 |
Tubulin folding cofactor D C terminal |
0.0051 |
| Pfam |
PF08216.6 |
Eukaryotic domain of unknown function (DUF1716) |
7.5e-32 |
| Pfam |
PF13765.1 |
SPRY-associated domain |
0.077 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL015153-PA |
| H. sapiens |
ENSP00000362568 |
| D. melanogaster |
FBgn0037644 |
| A. aegypti |
AAEL000475 |
| H. sapiens |
ENSP00000355050 |
| C. quinquefasciatus |
CPIJ006035 |
| H. sapiens |
ENSP00000362572 |
| P. humanus |
PHUM033910-PA |
| A. mellifera |
GB18025-PA |
| T. castaneum |
TC005070 |
| D. plexippus |
DPOGS204228PA |
| P. vanderplanki |
Pv.12488 |
| S. invicta |
SI2.2.0_16418 |
| H. sapiens |
ENSP00000384355 |
| A. gambiae |
AGAP001357 |
| B. mori |
BGIBMGA007509-TA |
| N. vitripennis |
NV13411-PA |
| M. musculus |
ENSMUSG00000027649 |