MidgeBase gene description page [Pn.04807]
Outline
| Gene ID | Pn.04807 |
| Type | Protein coding gene |
| Scaffold | PnScaf4127 |
| Start | 4112 |
| End | 5215 |
| Direction | - |
Sequence
Transcript: 1047 (bp)
ATGTTATTCTTAAGAAGAAGAATGAGCTACCTTGCATCGGTTTTAAAGTATGTAGACTACGGCGATCCGTTAAAGGTAGTTAGATTAACTTCGGAAAGCTTAGAAACGCCAAAAGAGGACAAGTTAGTCGTGAAAGTTTTATACGCACCGATAAATCCTGCCGACATCAACACAATCCAGGGAAAATATCCCGTCAAACCCGAGTTCACGCATGACGGAGCTGTGGGAGGTAACGAATGCGTTGCTGAAGTTCTGGAAGTTGGGCCGAACGTAAAATCGATAGCTGTCGGTGACACTGTTTTACCGTTGGCAACTGGACTCGGCACTTGGCGAACTCACGCAACCTACAGAGAAAGCGAACTTATCAAAGTCCCGCGAGAAGTTCCTCTTATCGAGGCAGCTACAATGAGTGTCAACAAATGCACGGCATATCGAATGATCAAGGATTTTCTAGAGCTAAAACCCGGTGATTGTCTAATTCAAAACGGAGCGAATAGTGCATGTGGCCAAGACATTATCCAACTTTGCAAAGCATGGGGTATCAAGAACGTGGGCATCGTTAGAGACAGAACTGATATTCAGCAGCTAAGGGAATATTTGATGGGGCTTGGAGCAAATGAGATTCTTACGGAGGAGCAGTGTAGGTCAACAAAACTATTCAAAGAGGGTAGACTTCCTAACCCAAAGCTCGCCTTAAATTGCGTCGGAGGCAAGAATGCCCTAGAAATGTCGAAACATCTGGCTCAAAAAGGTATGATGGTAACCTATGGAGGAATGTCTCGGGAGCCTGTCTTGGTACCAACTTCAGCACTAATATTTAAAGATCACGAGTTCAAGGGATTTTGGATGACACGATGGAAAGAGGAGAAGGGAAGGTCTGTAGAGGCAATTGATATGTTCAACAACCTTTTCAATTTGATTAAGGACGAAAAGCTGAAAGCACCAAAGCACGAGTTAATATCATTCAGAAATTATGAACAAGCATTGAAAAATGCATTGAGTATCCAAGGATTTGCTGGAGCAAAAACTATTTTAGACTTTACTCAA
Protein: 349 (aa)
MLFLRRRMSYLASVLKYVDYGDPLKVVRLTSESLETPKEDKLVVKVLYAPINPADINTIQGKYPVKPEFTHDGAVGGNECVAEVLEVGPNVKSIAVGDTVLPLATGLGTWRTHATYRESELIKVPREVPLIEAATMSVNKCTAYRMIKDFLELKPGDCLIQNGANSACGQDIIQLCKAWGIKNVGIVRDRTDIQQLREYLMGLGANEILTEEQCRSTKLFKEGRLPNPKLALNCVGGKNALEMSKHLAQKGMMVTYGGMSREPVLVPTSALIFKDHEFKGFWMTRWKEEKGRSVEAIDMFNNLFNLIKDEKLKAPKHELISFRNYEQALKNALSIQGFAGAKTILDFTQ
| Type | Start | End | Length |
| CDS |
4115 |
4980 |
866 |
| CDS |
5035 |
5215 |
181 |
| intron |
4981 |
5034 |
54 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648220 |
zinc binding dehydrogenase [Aedes aegypti] gb|EAT44661.1| zinc binding dehydrogenase [Aedes aegypti] |
1e-126 |
| InterPro |
IPR011032 |
GroES-like |
|
| InterPro |
IPR020843 |
Polyketide synthase, enoylreductase |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013154 |
Alcohol dehydrogenase GroES-like |
|
| InterPro |
IPR013149 |
Alcohol dehydrogenase, C-terminal |
|
| InterPro |
IPR002085 |
Alcohol dehydrogenase superfamily, zinc-type |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0016747 |
transferase activity, transferring acyl groups other than amino-acyl groups |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF00107.21 |
Zinc-binding dehydrogenase |
3e-11 |
| Pfam |
PF08240.7 |
Alcohol dehydrogenase GroES-like domain |
6.5e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA008873-TA |
| D. plexippus |
DPOGS216075PA |
| C. quinquefasciatus |
CPIJ006453 |
| M. musculus |
ENSMUSG00000028910 |
| A. mellifera |
GB19048-PA |
| P. vanderplanki |
Pv.13573 |
| H. melpomene |
HMEL008940-PA |
| P. humanus |
PHUM127430-PA |
| S. invicta |
SI2.2.0_06294 |
| H. sapiens |
ENSP00000263702 |
| H. sapiens |
ENSP00000436831 |
| A. gambiae |
AGAP011834 |
| A. aegypti |
AAEL003995 |
| D. melanogaster |
FBgn0033883 |
| T. castaneum |
TC006794 |
| N. vitripennis |
NV12929-PA |
| H. sapiens |
ENSP00000362896 |
| C. quinquefasciatus |
CPIJ014619 |