MidgeBase gene description page [Pn.04805]
Outline
| Gene ID | Pn.04805 |
| Type | Protein coding gene |
| Scaffold | PnScaf4122 |
| Start | 10113 |
| End | 16863 |
| Direction | - |
Sequence
Transcript: 1749 (bp)
ATGGCGTCCGTGACCGCGTTTTTGCCGCTGGCGAGGGCATCGGCAGTGGGATGGATCCCGATCGCGGCGAACCCGCTGCCGCCGCCGCCGGTCGTGAAGAAGGACCGCCGGAAGGCGGAGGACGAGAAGATGCTGATCAACGTGTCGGGGCGGCGCTTCGAGACGTGGCGCAACACGCTCGAGAAGTACCCGGACACGCTGCTCGGCAGCACCGAGCGCGAGTTCTTCTACGACGAGGAGCTGTGCGAGTACTTCTTCGACCGCGACCCCGAGATCTTCCGGCACATCCTCAACTACTACCACACCGGGAAGCTGCACTACCCGCGCCACGAGTGCCTCCTCTCCTACGACGAGGAGCTCTCCTTCTTCGGCATCCTCCCCGACGTCATCGGCGACTGCTGCTACGAGGACTACCGCGACCGCAAGCGCGAAAACACCGAGCGCCTCATGGACGACAAGCTCAGCGAGAACGGCGAGGCCAACCATCCGCCGCTCACCAATCAGCGCGAGCGCATGTGGCGCGCCTTCGAGAACCCGCACACCTCCACCTCCGCCCTCGTCTTCTACTACGTCACCGGCTTCTTCATCGCCGTCTCCGTCATGGCCAATGTCATCGAGACTGTTCCGTGCGGGCACAGACCGGGTCGAGCGGGATCCATATCATGCGGCGAACGCTACAAAGTCGTCTTCTTCTGCCTCGACACAGCCTGCGTGATGATCTTCACGGCCGAGTATCTGCTGCGACTCTTCGCCGCGCCCGACCGGCTGCGGTTTGTTAGATCTGTTATGTCCGTTATTGATGTTGTTGCCATTATGCCATACTACATAGGATTATTCATGACCGACAACGACGACGTGTCCGGTGCGTTCGTGACACTGCGCGTCTTTCGCGTGTTCCGAATCTTCAAGTTCTCGCGGCACTCGCAGGGTCTGCGCATCCTCGGCTACACGCTCAAGTCGTGCGCCTCCGAGCTCGGCTTTCTCGTCTTCTCGCTCGCCATGGCCATCATCATCTTCGCCACCGTCATGTTCTATGCCGAGAAGAACGTCGACGGCACCAACTTCACGTCCATTCCGGCCGCGTTCTGGTACACGATTGTGACGATGACCACGCTGGGCTACGGCGACATGGTGCCCGAAACGATAGCCGGCAAAATAGTGGGCGGCGTGTGCTCGCTGAGCGGAGTGCTTGTCATCGCCCTTCCCGTGCCCGTCATCGTGTCCAACTTCTCGCGCATCTATCATCAGAATCAGCGTGCCGACAAGCGCAAGGCGCAGCGAAAGGCGCGACTCGCCCGAATACGACTGGCCAAGGCGAGCTCGTCGGCCGCCTTCGCCAACAAGAAGCGACTCGCCGAGATGAGGATGCTCAAGCACCAGCAGGGCATGGACTCCGAGGACTTTAGCGACGAGGACATTTTCGAGATGCAGCACCACCATCTGCTCAAGTGCTTGGAGAAGGCGACGGACCGCGAGTTCGCCGACCTCGACACCTTCAACGGTGCAACGAAGCGACCGGGTTCGCCGTCGCCACTGACGAGTCCGATTCATGCGCGCATCAGCAAGCTCGGCTTCCTGCAAGCGTGCTGCGGCCGGTGCTGCAACGGCAAGCGCTACAAGGGCTACGGGAAGTACGTGCCGGCGAGGACGAGCAGCCGCGTGGTGATCCACAACAACCGCAACAATGACAGCAACGACAACAGCAACCAGAACGAGGAGAGCATGGACTACCTCGTGGAGGAGACCTTC
Protein: 583 (aa)
MASVTAFLPLARASAVGWIPIAANPLPPPPVVKKDRRKAEDEKMLINVSGRRFETWRNTLEKYPDTLLGSTEREFFYDEELCEYFFDRDPEIFRHILNYYHTGKLHYPRHECLLSYDEELSFFGILPDVIGDCCYEDYRDRKRENTERLMDDKLSENGEANHPPLTNQRERMWRAFENPHTSTSALVFYYVTGFFIAVSVMANVIETVPCGHRPGRAGSISCGERYKVVFFCLDTACVMIFTAEYLLRLFAAPDRLRFVRSVMSVIDVVAIMPYYIGLFMTDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRLAKASSSAAFANKKRLAEMRMLKHQQGMDSEDFSDEDIFEMQHHHLLKCLEKATDREFADLDTFNGATKRPGSPSPLTSPIHARISKLGFLQACCGRCCNGKRYKGYGKYVPARTSSRVVIHNNRNNDSNDNSNQNEESMDYLVEETF
| Type | Start | End | Length |
| CDS |
10116 |
10244 |
129 |
| CDS |
14025 |
14177 |
153 |
| CDS |
14379 |
14727 |
349 |
| CDS |
14840 |
15150 |
311 |
| CDS |
15790 |
15974 |
185 |
| CDS |
16242 |
16863 |
622 |
| intron |
10245 |
14024 |
3780 |
| intron |
14178 |
14378 |
201 |
| intron |
14728 |
14839 |
112 |
| intron |
15151 |
15789 |
639 |
| intron |
15975 |
16241 |
267 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001985642 |
GH14392 [Drosophila grimshawi] gb|EDV97990.1| GH14392 [Drosophila grimshawi] |
0.0 |
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR003975 |
Potassium channel, voltage dependent, Kv4 |
|
| InterPro |
IPR021645 |
Shal-type voltage-gated potassium channels |
|
| InterPro |
IPR003968 |
Potassium channel, voltage dependent, Kv |
|
| InterPro |
IPR005821 |
Ion transport domain |
|
| InterPro |
IPR003131 |
Potassium channel tetramerisation-type BTB domain |
|
| InterPro |
IPR003091 |
Voltage-dependent potassium channel |
|
| InterPro |
IPR024587 |
Potassium channel, voltage dependent, Kv4, C-terminal |
|
| InterPro |
IPR000210 |
BTB/POZ-like |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(BP) |
GO:0006813 |
potassium ion transport |
|
| Gene Ontology(BP) |
GO:0051260 |
protein homooligomerization |
|
| Gene Ontology(BP) |
GO:0006811 |
ion transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0008076 |
voltage-gated potassium channel complex |
|
| Gene Ontology(MF) |
GO:0005249 |
voltage-gated potassium channel activity |
|
| Gene Ontology(MF) |
GO:0005216 |
ion channel activity |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF11879.3 |
Domain of unknown function (DUF3399) |
2.9e-16 |
| Pfam |
PF07885.11 |
Ion channel |
6.7e-13 |
| Pfam |
PF11601.3 |
Shal-type voltage-gated potassium channels |
1.1e-08 |
| Pfam |
PF02214.17 |
K+ channel tetramerisation domain |
3e-27 |
| Pfam |
PF00520.26 |
Ion transport protein |
3.2e-28 |
| Pfam |
PF08016.7 |
Polycystin cation channel |
0.055 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000040896 |
| P. humanus |
PHUM065350-PA |
| M. musculus |
ENSMUSG00000060882 |
| B. mori |
BGIBMGA013355-TA |
| A. gambiae |
AGAP007046 |
| H. sapiens |
ENSP00000358711 |
| H. sapiens |
ENSP00000306923 |
| T. castaneum |
TC004130 |
| S. invicta |
SI2.2.0_13248 |
| P. vanderplanki |
Pv.11492 |
| H. sapiens |
ENSP00000319591 |
| D. melanogaster |
FBgn0005564 |
| H. melpomene |
HMEL003747-PA |
| N. vitripennis |
NV13998-PA |
| C. quinquefasciatus |
CPIJ018527 |
| H. sapiens |
ENSP00000333496 |
| H. sapiens |
ENSP00000218176 |
| M. musculus |
ENSMUSG00000009731 |
| H. sapiens |
ENSP00000365660 |
| A. mellifera |
GB17390-PA |
| D. plexippus |
DPOGS214469PA |
| A. aegypti |
AAEL007104 |
| P. vanderplanki |
Pv.07438 |