MidgeBase gene description page [Pn.04797]
Outline
| Gene ID | Pn.04797 |
| Type | Protein coding gene |
| Scaffold | PnScaf4109 |
| Start | 89270 |
| End | 90069 |
| Direction | + |
Sequence
Transcript: 678 (bp)
ATGTCACAACTCGCTGCTAAAATCGGTCCATCCATCCTCAACGCTGACCTCTCGCAATTGTACGACGAATCGCAAAAACTCCTCGACAATGGCGCAGATTATTTGCACTTGGACGTGATGGATGGTCACTTTGTGCCTAACCTGACCTTCGGTCATGCAGTTGTCAAGTGCCTGAGGAACAAGATTAAGGAGGCTTTCTTCGAGACACACATGATGGTGTCGAGGCCAGAGCAGTGGATTTCCGAGATGGCAGACGCTGGCGTCGATCAGTACACCTTTCACATTGAGCCAGTAGAGAATGTCGCAGACGTTTGTCGCAAGGTGCGCGAGGCTGGAATGAAAGTTGGCCTGGCTATCAAGCCAAAGACTCCCGTCGAGGTCGTGGAGAAGTTTATCGAAATGGCGGACTTGGTTCTCGTGATGACCGTTGAACCCGGATTTGGCGGTCAAAAGTTCATGGAAGACATGATGTCGAAAGTGAAACATCTGCGCGACAACTACCCAACGCTGAACATCGAGGTGGATGGCGGTGTGGCGTTGAACACGATCGACTGCTGCGCTAAGGCAGGCGCTAATTGGATTGTGAGTGGAACGGGCGTGATCAAGGCTGCGGATCAAGGAGCTGTCATCAAACAACTGAGGAGCTCGGTGACACAAGCCATTGCCGAATACTCGAAG
Protein: 226 (aa)
MSQLAAKIGPSILNADLSQLYDESQKLLDNGADYLHLDVMDGHFVPNLTFGHAVVKCLRNKIKEAFFETHMMVSRPEQWISEMADAGVDQYTFHIEPVENVADVCRKVREAGMKVGLAIKPKTPVEVVEKFIEMADLVLVMTVEPGFGGQKFMEDMMSKVKHLRDNYPTLNIEVDGGVALNTIDCCAKAGANWIVSGTGVIKAADQGAVIKQLRSSVTQAIAEYSK
| Type | Start | End | Length |
| CDS |
89270 |
89374 |
105 |
| CDS |
89435 |
89675 |
241 |
| CDS |
89735 |
90066 |
332 |
| intron |
89375 |
89434 |
60 |
| intron |
89676 |
89734 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001858610 |
ribulose-phosphate 3-epimerase [Culex quinquefasciatus] gb|EDS34953.1| ribulose-phosphate 3-epimerase [Culex quinquefasciatus] |
9e-98 |
| InterPro |
IPR013785 |
Aldolase-type TIM barrel |
|
| InterPro |
IPR000056 |
Ribulose-phosphate 3-epimerase-like |
|
| InterPro |
IPR011060 |
Ribulose-phosphate binding barrel |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016857 |
racemase and epimerase activity, acting on carbohydrates and derivatives |
|
| Pfam |
PF00290.15 |
Tryptophan synthase alpha chain |
0.019 |
| Pfam |
PF00834.14 |
Ribulose-phosphate 3 epimerase family |
6.1e-68 |
| Pfam |
PF00215.19 |
Orotidine 5'-phosphate decarboxylase / HUMPS family |
0.053 |
| Pfam |
PF01729.14 |
Quinolinate phosphoribosyl transferase, C-terminal domain |
5.6e-05 |
| Pfam |
PF04055.16 |
Radical SAM superfamily |
0.0023 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM018380-PA |
| D. plexippus |
DPOGS208889PA |
| N. vitripennis |
NV12241-PA |
| B. mori |
BGIBMGA002461-TA |
| M. musculus |
ENSMUSG00000026005 |
| T. castaneum |
TC011438 |
| S. invicta |
SI2.2.0_07367 |
| A. aegypti |
AAEL010505 |
| A. gambiae |
AGAP005080 |
| H. sapiens |
ENSP00000411186 |
| C. quinquefasciatus |
CPIJ010817 |
| H. melpomene |
HMEL003888-PA |
| H. sapiens |
ENSP00000352401 |
| H. sapiens |
ENSP00000400449 |
| D. melanogaster |
FBgn0050499 |
| P. vanderplanki |
Pv.04887 |