MidgeBase gene description page [Pn.04780]
Outline
| Gene ID | Pn.04780 |
| Type | Protein coding gene |
| Scaffold | PnScaf4109 |
| Start | 2295 |
| End | 4472 |
| Direction | + |
Sequence
Transcript: 684 (bp)
ATGTCTGGAGCAGGATGGCCAAAAAGAGCGACTTCTGCAGACCAGTCGCAGTCACAAACACAGTCTGTTAAGGTTCCGATCGGTCAATCACTCACGCTAAACAGAACAATTAATCTATATCCATTGACCAACTACACCTTCGGAACAAAAGAGCCGCTGTTTGAAAAAGATCCGTCAGTACCGGCTAGATTTCAGAGAATGCGCGACGAATTTGAAAAGATTGGAATGCGAAGATCTGTGGAGGGATGCCTGCTTGTACATGAGCACGGCTTACCTCACGTACTTCTTCTTCAACTGGGCACGACTTTCTTTAAGCTGCCCGGAGGAGAACTGAATGCAGGCGAGGACGAGGTCGATGGACTAAAGAGACTCCTGACAGAAACTTTAGGACAACCGTCTGGAGCAAGCTCGTGCAACTGGATTATTGAGGAATGCATTGGTAACTGGTATCGACCGAACTTTGAGCCGCCGACATATCCCTACTGCCCGCCTCACATCACAAAGCCAAAAGAACACAAAAGGTTATTTTTAGTTCAGCTACAGGAAAAGGCGCTTTTTGCCGTTCCAAAGAACTACAAGCTAGTAGCTGCACCGCTCTTTGAATTGTACGACAATGCCCAAGGATATGGGCCGATAATTTCCTCGCTACCGCAAGCGTTATGCAGATTCAACTTTATCTACATG
Protein: 228 (aa)
MSGAGWPKRATSADQSQSQTQSVKVPIGQSLTLNRTINLYPLTNYTFGTKEPLFEKDPSVPARFQRMRDEFEKIGMRRSVEGCLLVHEHGLPHVLLLQLGTTFFKLPGGELNAGEDEVDGLKRLLTETLGQPSGASSCNWIIEECIGNWYRPNFEPPTYPYCPPHITKPKEHKRLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLPQALCRFNFIYM
| Type | Start | End | Length |
| CDS |
2295 |
2301 |
7 |
| CDS |
2362 |
2470 |
109 |
| CDS |
2531 |
2795 |
265 |
| CDS |
3458 |
3626 |
169 |
| CDS |
4277 |
4391 |
115 |
| CDS |
4451 |
4469 |
19 |
| intron |
2302 |
2361 |
60 |
| intron |
2471 |
2530 |
60 |
| intron |
2796 |
3457 |
662 |
| intron |
3627 |
4276 |
650 |
| intron |
4392 |
4450 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308558 |
AGAP007242-PA [Anopheles gambiae str. PEST] gb|EAA04203.3| AGAP007242-PA [Anopheles gambiae str. PEST] |
1e-106 |
| InterPro |
IPR016706 |
Cleavage/polyadenylation specificity factor subunit 5 |
|
| InterPro |
IPR000086 |
NUDIX hydrolase domain |
|
| Gene Ontology(BP) |
GO:0006378 |
mRNA polyadenylation |
|
| Gene Ontology(CC) |
GO:0005849 |
mRNA cleavage factor complex |
|
| Gene Ontology(MF) |
GO:0003729 |
mRNA binding |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Pfam |
PF00293.23 |
NUDIX domain |
0.00037 |
| Pfam |
PF13869.1 |
Nucleotide hydrolase |
2.6e-79 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL001371 |
| A. mellifera |
GB18630-PA |
| A. aegypti |
AAEL004266 |
| B. mori |
BGIBMGA001806-TA |
| T. castaneum |
TC010485 |
| H. melpomene |
HMEL016089-PA |
| M. musculus |
ENSMUSG00000031754 |
| N. vitripennis |
NV12103-PA |
| D. melanogaster |
FBgn0035987 |
| P. humanus |
PHUM473820-PA |
| A. gambiae |
AGAP007242 |
| C. quinquefasciatus |
CPIJ014870 |
| H. sapiens |
ENSP00000300291 |
| D. plexippus |
DPOGS213284PA |
| P. vanderplanki |
Pv.08994 |