MidgeBase gene description page [Pn.04718]
Outline
| Gene ID | Pn.04718 |
| Type | Protein coding gene |
| Scaffold | PnScaf4028 |
| Start | 11588 |
| End | 13732 |
| Direction | - |
Sequence
Transcript: 1569 (bp)
ATGACTAGTTCTGAGAATAGCATAAGCAATTTGAATGCTTATATATCAATTTCTGACTTTTACAATGGCAAAAGTGTATTTATCACGGGCGGCACCGGTTTTTTAGGGAAAATGCTGATAGAGAAACTTCTGCGCTCGTGTCCCGGAATCAAAAATATTTATCTACTCATGCGGCCGAAGCGTGGCGCAGAAATCACTACACGTCTTAATGAAATTTTAAATAGTCAACTTTTTGATAAACTTCGTAAGGAGCGTCCGAATGACTTGAGCAAAATCATCCCGATTCTCGGCGACATCACGTCCGAGGGCCTCGGCATATCCGAGAGCGATCAACAACTACTAAGCGAAACAATAAACATAGTTTTTCACTCGGCGGCAACTGTTAAATTTGATGAGAAGCTGAAGCTTTCTGTTACGATTAATATGCTAGGAACAAAACGATTGTTGGAACTTTGTCAGCGCATGCTGCATTTAGAGGCTTTGATTCATGTGTCGACGGCTTATTGCAATTGCGATCGAGCTGATGTGGCGGAGATAATATATAATCCACCCTACAAACCCGATGATATTATATCGTTGGTACAATGGCTTCCAGAGGATTTATTGGATAAATTGACACCCTCATTGATTGGAAATCGTCCAAATACGTATACATTCACGAAAGCACTCACGGAAGCAATGCTGTTGAAGGAGGCAGGAAATTTGCCGGTTGCCATTGTCAGACCCTCAATCGTTTTGTCAAGCATGAACGAGCCGATGAGTGGCTGGGTCGACAACTGGAACGGACCTACGGGAATTGTGTCGGCAGTGGGCAAGGGCATTTTTCATACAATCATGTGCAATGAAGACAGCGTGGCCGACTTTGTGCCAGTCGACTTGGTAATAAACCTGATGGTTGCAGCTGCGTGGAGCACGGCGACAGCCAAGACGACAATGACGGTGTACAACTGCTGTACCGGCGTCAACAAGCCCATCACATGGGGAAGACTTGTATCATTAGCAATTGAAAAAATGAGACTCCATCCTTTAGAGGGCGTATTTTGGTATCCGACTGGAATCCTCCGCAGAAATCGAACGCTTAACACAATTCACTCAATTCTGGCGCACTATATTCCCGCTTATATTTTGGACATTCTAGCGCGCATTGCTGGCCGAAAACCCATAATGATCAAAGTTCAGGACAAACTAGCGAAATCGGTGCAATGCCTAGAATACTTCACGACACACCAATGGAAGTTTCACTCGGAGAATGTCCAGCACCTCCTCGACACAATGACCGAGACGGACAAGAAGGAGTTCCAGTTTGACGTTCGTACAATAGAGTGGGAGGACTACGTGGAGAAGTATGTGCTAGGTTTCCGCCAATTTCTCTTCAAACAGAATCCATCCTCACTTGAAGTCAGCCGAAAAAGGATGCACAGGATGAAAATTCTTCATCAGATTTCAAAGCTACTGATAGTAATCTTGTTCTGGAGATTTCTCTTTAACCGTTCAAGGAAGCTCAGAGAGCTGTGGAGAAACTTCATTTCAGTCATTTCGACACTCTCCGTCACACTCGTCAGAACCAAG
Protein: 523 (aa)
MTSSENSISNLNAYISISDFYNGKSVFITGGTGFLGKMLIEKLLRSCPGIKNIYLLMRPKRGAEITTRLNEILNSQLFDKLRKERPNDLSKIIPILGDITSEGLGISESDQQLLSETINIVFHSAATVKFDEKLKLSVTINMLGTKRLLELCQRMLHLEALIHVSTAYCNCDRADVAEIIYNPPYKPDDIISLVQWLPEDLLDKLTPSLIGNRPNTYTFTKALTEAMLLKEAGNLPVAIVRPSIVLSSMNEPMSGWVDNWNGPTGIVSAVGKGIFHTIMCNEDSVADFVPVDLVINLMVAAAWSTATAKTTMTVYNCCTGVNKPITWGRLVSLAIEKMRLHPLEGVFWYPTGILRRNRTLNTIHSILAHYIPAYILDILARIAGRKPIMIKVQDKLAKSVQCLEYFTTHQWKFHSENVQHLLDTMTETDKKEFQFDVRTIEWEDYVEKYVLGFRQFLFKQNPSSLEVSRKRMHRMKILHQISKLLIVILFWRFLFNRSRKLRELWRNFISVISTLSVTLVRTK
| Type | Start | End | Length |
| CDS |
11591 |
11738 |
148 |
| CDS |
11810 |
12067 |
258 |
| CDS |
12138 |
12270 |
133 |
| CDS |
12355 |
12505 |
151 |
| CDS |
12589 |
12734 |
146 |
| CDS |
12803 |
12923 |
121 |
| CDS |
12996 |
13130 |
135 |
| CDS |
13256 |
13732 |
477 |
| intron |
11739 |
11809 |
71 |
| intron |
12068 |
12137 |
70 |
| intron |
12271 |
12354 |
84 |
| intron |
12506 |
12588 |
83 |
| intron |
12735 |
12802 |
68 |
| intron |
12924 |
12995 |
72 |
| intron |
13131 |
13255 |
125 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001995294 |
GH23076 [Drosophila grimshawi] gb|EDV98366.1| GH23076 [Drosophila grimshawi] |
0.0 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
1.1e-07 |
| Pfam |
PF04321.12 |
RmlD substrate binding domain |
0.0041 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.016 |
| Pfam |
PF03015.14 |
Male sterility protein |
7.6e-30 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
0.036 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
4.6e-07 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
1.1e-06 |
| Pfam |
PF07993.7 |
Male sterility protein |
5.9e-73 |
| Pfam |
PF08659.5 |
KR domain |
0.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB17931-PA |
| D. plexippus |
DPOGS211698PA |
| N. vitripennis |
NV15377-PA |
| H. sapiens |
ENSP00000449349 |
| S. invicta |
SI2.2.0_12809 |
| D. melanogaster |
FBgn0034145 |
| H. melpomene |
HMEL016715-PA |
| A. aegypti |
AAEL007298 |
| P. humanus |
PHUM423990-PA |
| P. vanderplanki |
Pv.02424 |
| H. sapiens |
ENSP00000346874 |
| H. sapiens |
ENSP00000437111 |
| H. sapiens |
ENSP00000443291 |
| T. castaneum |
TC015052 |
| P. humanus |
PHUM288600-PA |
| B. mori |
BGIBMGA011395-TA |
| M. musculus |
ENSMUSG00000030303 |
| H. sapiens |
ENSP00000182377 |