MidgeBase gene description page [Pn.04655]
Outline
| Gene ID | Pn.04655 |
| Type | Protein coding gene |
| Scaffold | PnScaf3942 |
| Start | 21634 |
| End | 22547 |
| Direction | + |
Sequence
Transcript: 546 (bp)
ATGAACGAAAAGATGTGCAAAATGTCGTCACGAAAAACAGCCGGTCGCCGTACTGCTACAAAGAAACGAGCCCAGCGTGCCACATCGAATGTTTTCGCAATGTTCGATCAGGCTCAGATCGCAGAATTCAAAGAGGCCTTCAACATGATTGACCAAAATCGCGATGGCTTCATTGAAAAGGAGGATCTGCACGATATGCTGGCTTCACTCGGCAAGAATCCAACGGAGGATTACTTGGAAGGAATGATGAACGAAGCACCCGGCCCGATAAACTTCACCATGTTCCTTACGCTTTTCGGCGAACGATTGCAAGGAACAGATCCCGAAGATGTCATCAAAAATGCCTTTGGGTGCTTCGATGAAGACAATAACGGTCATATTTCGGAAGATCGCCTCAGAGAGCTTCTAACTACAATGGGCGATCGCTTTACTGACGAAGAGGTCGACGAAATGTATCGCGAAGCTCCAATTAAGAATAATTTATTTGATTACATCGAATTCACGAGAATCTTGAAACACGGCGCAAAAGACAACGAGAATGAACAA
Protein: 182 (aa)
MNEKMCKMSSRKTAGRRTATKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFIEKEDLHDMLASLGKNPTEDYLEGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEDNNGHISEDRLRELLTTMGDRFTDEEVDEMYREAPIKNNLFDYIEFTRILKHGAKDNENEQ
| Type | Start | End | Length |
| CDS |
21634 |
21649 |
16 |
| CDS |
21870 |
21985 |
116 |
| CDS |
22057 |
22365 |
309 |
| CDS |
22440 |
22544 |
105 |
| intron |
21650 |
21869 |
220 |
| intron |
21986 |
22056 |
71 |
| intron |
22366 |
22439 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653522 |
myosin regulatory light chain 2 smooth muscle [Aedes aegypti] ref|XP_001653523.1| myosin regulatory light chain 2 smooth muscle [Aedes aegypti] gb|EAT39249.1| myosin regulatory light chain 2 smooth muscle [Aedes aegypti] gb|EAT39250.1| myosin regulatory light chain 2 smooth muscle [Aedes aegypti] |
2e-89 |
| InterPro |
IPR018247 |
EF-Hand 1, calcium-binding site |
|
| InterPro |
IPR018249 |
EF-HAND 2 |
|
| InterPro |
IPR002048 |
Calcium-binding EF-hand |
|
| InterPro |
IPR011992 |
EF-hand-like domain |
|
| InterPro |
IPR018248 |
EF-hand |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF03672.8 |
Uncharacterised protein family (UPF0154) |
7.9e-06 |
| Pfam |
PF13499.1 |
EF-hand domain pair |
1.2e-12 |
| Pfam |
PF10591.4 |
Secreted protein acidic and rich in cysteine Ca binding region |
0.052 |
| Pfam |
PF00036.27 |
EF hand |
8.5e-13 |
| Pfam |
PF07553.6 |
Host cell surface-exposed lipoprotein |
0.013 |
| Pfam |
PF13405.1 |
EF-hand domain |
1.2e-12 |
| Pfam |
PF13833.1 |
EF-hand domain pair |
8.4e-08 |
| Pfam |
PF13202.1 |
EF hand |
1.3e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000067818 |
| H. sapiens |
ENSP00000217652 |
| A. gambiae |
AGAP000927 |
| H. sapiens |
ENSP00000441231 |
| H. sapiens |
ENSP00000463559 |
| M. musculus |
ENSMUSG00000034868 |
| H. sapiens |
ENSP00000463614 |
| H. sapiens |
ENSP00000279022 |
| H. sapiens |
ENSP00000462171 |
| P. humanus |
PHUM538960-PA |
| S. invicta |
SI2.2.0_02799 |
| N. vitripennis |
NV10438-PA |
| P. vanderplanki |
Pv.06225 |
| A. mellifera |
GB18838-PA |
| H. sapiens |
ENSP00000383037 |
| B. mori |
BGIBMGA012961-TA |
| D. melanogaster |
FBgn0003514 |
| D. plexippus |
DPOGS206955PA |
| A. aegypti |
AAEL008921 |
| T. castaneum |
TC030667 |
| H. sapiens |
ENSP00000464464 |
| M. musculus |
ENSMUSG00000024048 |
| A. mellifera |
GB17693-PA |
| H. sapiens |
ENSP00000237500 |
| H. sapiens |
ENSP00000464359 |
| H. melpomene |
HMEL014351-PA |