MidgeBase gene description page [Pn.04642]
Outline
| Gene ID | Pn.04642 |
| Type | Protein coding gene |
| Scaffold | PnScaf3926 |
| Start | 37869 |
| End | 39607 |
| Direction | - |
Sequence
Transcript: 1581 (bp)
ATGAGCTACCAAAATTACAAGAGAAAACTTCCCCCATGGATGCTGAAGAACAAGGCAAAAAAGGAGACGAATACAGATTTAAAAAATGAGCCTATGCAGAAAATTTCAAAAATAACCAAATACACCCTCAAACCGGTCGAGTTTAATGGAAAAATACATTACCTCAAAGAGCACGACGAAATCGAGAACAAAATCAAGGAACTTTTAATGACGATCAACGTTCAGGCAGACAATCTTAAGACTGAAGAAAAAGAGGAAAGGTTCGTTCCCGTTGCCTTTGATATGGAATGGCCTTTTGAACCAGTGACCAACGAAAGCTTTAAAACTGCAGTCATCCAGATCTGCTTGAACATTGAAGAGGTCTTTATTCTGCAAGTCTCTAAATTAAAGAGAATTCCCGATGCACTGATTGCCTTCCTTCACAACAAACACGTCAAACTCCATGGACTTAACATTCGCATGGACTTGAAGAAGCTAAGCATTGACTTTCCCGAGACGAAGGCAGAGCGCTTGGAGTCCAGATGTGTTGATCTGCAAGAGTTCTACAACACAACATTTGGTGTATCGAAGAACTGGAGCCTCGCTGGTCTTTGTGCACACATTTTCGATTTAAGAATGGACAAGACTTTGCGCGTAAGCAAGTGGGATGCTGAACTATCGCGCGATCAGCAACTGTATGCAGCAATTGACGTGTTTATTGGCCAAAAAATTTATCATCACATAAGTGCGACTGATAAAGAGAACCAGCAAAAGTATCAGGGAATTTTCGGAAAGAGCGGCGATCACATTTCGGCAGTAAAATCAGATGCTAGACTTGAAAAGTGCGATTCCGAAGAATTTCAATACCGCTTCGGGAATATGGAAGACATGCAGCTTGTCGAATATAATGGAAAGATTCATTACTTGACTGACTTTTATCAAGTAGCGGAGGAGTTTGAAAAATTGAATCAACAAATAAATAAGATGGCAGAGACATTAGATGACGGTGTGAAAATTCCAGTAGCGTTTGATATGGAGTGGAGCTTCGATTTCAAAAACGGTCAAGGAAAGACTGCCGTTCTGCAGATTTGCTTCAATTTGAAGGAAGTCTACGTAATTCACATGTCTCGAGTTCAAAGAATTCCCGCTTCACTTAGTATCTTTCTGAAAAACGAAAATACTGTTTTGCATGGCGTTAATATCAAGAACGACTTTAGAAAACTCGAGAGAGATTTTCCTTGCATGAAAGCCGATCCATTGATTGAAAAATGCGTCGACCTCCGCACTTACTATAATGACGTCTTTAACTGCTCGGAAAAGTGGTCGCTTGCCACGCTTTGCGCACACACTTTAAAATTTAAGATGGACAAGTCGAGAAATGTGCGAATGAGCAAGTGGGATTATACGTGCTTGTCGAAGAAACAATTACAGTATGCTAGCATTGATGTTTACGTGGGTCAAAAAATTTACATGCACATTCACGCTCGTGAAAAAGAAAACGCCAGCAAATACTCGGGCTTTTTTGGTGTGTTCGATGAACTCGCAGCCGAAGAATCAAAGTTAAGTAATCTCGACGATGATATTAATGCACTGATGAACTCG
Protein: 527 (aa)
MSYQNYKRKLPPWMLKNKAKKETNTDLKNEPMQKISKITKYTLKPVEFNGKIHYLKEHDEIENKIKELLMTINVQADNLKTEEKEERFVPVAFDMEWPFEPVTNESFKTAVIQICLNIEEVFILQVSKLKRIPDALIAFLHNKHVKLHGLNIRMDLKKLSIDFPETKAERLESRCVDLQEFYNTTFGVSKNWSLAGLCAHIFDLRMDKTLRVSKWDAELSRDQQLYAAIDVFIGQKIYHHISATDKENQQKYQGIFGKSGDHISAVKSDARLEKCDSEEFQYRFGNMEDMQLVEYNGKIHYLTDFYQVAEEFEKLNQQINKMAETLDDGVKIPVAFDMEWSFDFKNGQGKTAVLQICFNLKEVYVIHMSRVQRIPASLSIFLKNENTVLHGVNIKNDFRKLERDFPCMKADPLIEKCVDLRTYYNDVFNCSEKWSLATLCAHTLKFKMDKSRNVRMSKWDYTCLSKKQLQYASIDVYVGQKIYMHIHAREKENASKYSGFFGVFDELAAEESKLSNLDDDINALMNS
| Type | Start | End | Length |
| CDS |
37872 |
38021 |
150 |
| CDS |
38105 |
39425 |
1321 |
| CDS |
39498 |
39607 |
110 |
| intron |
38022 |
38104 |
83 |
| intron |
39426 |
39497 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002056250 |
GJ10837 [Drosophila virilis] gb|EDW59362.1| GJ10837 [Drosophila virilis] |
3e-47 |
| InterPro |
IPR012337 |
Ribonuclease H-like domain |
|
| InterPro |
IPR002562 |
3'-5' exonuclease domain |
|
| Gene Ontology(BP) |
GO:0006139 |
nucleobase-containing compound metabolic process |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0008408 |
3'-5' exonuclease activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF01612.15 |
3'-5' exonuclease |
1e-35 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0038608 |
| T. castaneum |
TC010877 |
| C. quinquefasciatus |
CPIJ006314 |
| A. gambiae |
AGAP000530 |
| P. vanderplanki |
Pv.17644 |
| N. vitripennis |
NV14090-PA |
| A. aegypti |
AAEL009650 |
| A. mellifera |
GB19261-PA |
| S. invicta |
SI2.2.0_03012 |