MidgeBase gene description page [Pn.04636]
Outline
| Gene ID | Pn.04636 |
| Type | Protein coding gene |
| Scaffold | PnScaf3915 |
| Start | 3384 |
| End | 4213 |
| Direction | + |
Sequence
Transcript: 552 (bp)
ATGGTTGAAACGCCAGTTAAAACAAAATCGCCCGGTGCGACAAAGGGAAATTTTGTTGGAATCTCGAGTCTGATTGTGTTTTCGGTGCTGCTCGTCTGCTGGATTGCCGGCTTCGCATCGCGTCTCTTCGCAGTCATTCGATTCGAGAGCATCATCCACGAGTTTGATCCATGGTTCAATTATCGTGCAACAGCTTACATGGTAGAGCATGGATTCTACAAATTTCTCAATTGGTTTGATGAACGCGCTTGGTATCCTTTGGGTCGCATTGTCGGCGGAACAGTTTATCCAGGCCTGATGATTACGTCAGGCGGAATTCACTGGTTGCTTCATCTTTTAAACATCCCCGTCTACATTCGTGATATTTGTGTGTTCCTTGCACCAATCTTCAGCGGTCTCACTGCAATTTCAACTTATCTTCTGACCAAAGAGCTGTGGAGTCCGGGCGCTGGTCTTTTCGCTGCCAGCTTTATTGCCATCGTGCCAGGCTACATCAGCCGCTCGGCTCCATCTTCTGGGCCGCGGCAACTGCTCTCTCCTACTTCTACATGG
Protein: 184 (aa)
MVETPVKTKSPGATKGNFVGISSLIVFSVLLVCWIAGFASRLFAVIRFESIIHEFDPWFNYRATAYMVEHGFYKFLNWFDERAWYPLGRIVGGTVYPGLMITSGGIHWLLHLLNIPVYIRDICVFLAPIFSGLTAISTYLLTKELWSPGAGLFAASFIAIVPGYISRSAPSSGPRQLLSPTSTW
| Type | Start | End | Length |
| CDS |
3384 |
3556 |
173 |
| CDS |
3671 |
3759 |
89 |
| CDS |
3836 |
4077 |
242 |
| CDS |
4163 |
4210 |
48 |
| intron |
3557 |
3670 |
114 |
| intron |
3760 |
3835 |
76 |
| intron |
4078 |
4162 |
85 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002072965 |
GK13408 [Drosophila willistoni] gb|EDW83951.1| GK13408 [Drosophila willistoni] |
1e-76 |
| InterPro |
IPR003674 |
Oligosaccharyl transferase, STT3 subunit |
|
| Gene Ontology(BP) |
GO:0006486 |
protein glycosylation |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0004576 |
oligosaccharyl transferase activity |
|
| Pfam |
PF02516.9 |
Oligosaccharyl transferase STT3 subunit |
4e-44 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes