MidgeBase gene description page [Pn.04635]
Outline
| Gene ID | Pn.04635 |
| Type | Protein coding gene |
| Scaffold | PnScaf3910 |
| Start | 63722 |
| End | 65461 |
| Direction | + |
Sequence
Transcript: 1383 (bp)
ATGAAAATTTTTCATTTTTACCTGATTCTTTTGTGCATTCTCTGTGCGACATTGAAATCTGTAGAATGTGGTGGATTCTTTAAAAAAGTTGGCAATTTTATAACTGGCCGTGCAAACAGCGATGACAGTGAAGAAGATTCGGACGCTCAAAGTTACAAATTGGGTTCGCTTTTCATCAGACCAGCACTCAATCTGTTAGTTGGCGGCGATGAAGAGCAGAGCGAAAAAAAATCTGACGACGATTTTAAAAGCGATCCCATCGAAGCCACAACTCCTTACAACTATGCCAAATTCGCGTACTCGCCCGGCTACTACATCGATTCACTGGTCAAGTGCCCGAATGACGTTCTCAAGGGACAGACAATCACGATAACTTGCAGACGCCGCGGACTGATTGTTCCATGCGACGACCTCATTTTCGCTCAGGACACCGCTCAAATTCAGTGCAAAACGGGCTACGAGTACCCAAAGGTGAGCGGCATTCACACACAAATCGAGTGCAAGCAGAATGGCAAGTGGAGTGCGCCAATTTTCGAGTGCGTGCCGGCATGCGGGAAGGTCACGAAAATGGCAAAGGCCTTGGTCATTCACGGCAGCAACACCGACATCTCAGAGTTCCCGTGGAACGTCGCTATCTATAAGTTGGACGTGCTTGTGTGCAGCGGCAGCATTGTATCGGAGCGTGTTATTTTGTCGGCAGCACATTGCTTCTTTAAGGAGACAGCGCGTGGCATTCAACAATTTCCACTGGCCAATTTCGAAGTCGCTACGGGCAAGTACTTTCGGGACAAGAACGCGCCAGAGTCGAGCAATGTTCAGTACTTTAAGATCGCGAAAGTCGATATGCACGAGGCCTACTTCGGCTATCGAGGAAATTACGACGCAGACATTGCGGTTGTTACGTTGGACAGGCCGATTGTCTATCACCCGCATATCGCACCGATTTGCTTGAACCTCAACCTCAAGACACTCATCGAGAAGCAAGCTCCGCCGCACGGCACAATGGGACTCGTCGTCGGTTATGGCTACACGGAAGCGGATGGACAACCGAGCGACAGACTCAAGAAAATCGAAATGCCGATTGTCGAAACGAGGCAGTGCAAGGAGGAGGCTTCAGACGGATTCAAGCCCTTCGTGACGAGCGACAAATTTTGCGCCGGCTATAATGATGGAACGGGAGGCGTGTGTCGAGGTGACTCAGGCGCTGGCTTCGTCACCGGACGAACTGTTGATGGCGAGACTGTTTACCACATTCACGGAATCGTCAGCAATACACGACTCGCAAATGGCGGCTGTGACCTGAATTTCTATACGATGTTCACACACGTTCAGAACTATGTCGATCTAATAAAGCACGTGATTGAAGACTCGAAGAGCGAAGGC
Protein: 461 (aa)
MKIFHFYLILLCILCATLKSVECGGFFKKVGNFITGRANSDDSEEDSDAQSYKLGSLFIRPALNLLVGGDEEQSEKKSDDDFKSDPIEATTPYNYAKFAYSPGYYIDSLVKCPNDVLKGQTITITCRRRGLIVPCDDLIFAQDTAQIQCKTGYEYPKVSGIHTQIECKQNGKWSAPIFECVPACGKVTKMAKALVIHGSNTDISEFPWNVAIYKLDVLVCSGSIVSERVILSAAHCFFKETARGIQQFPLANFEVATGKYFRDKNAPESSNVQYFKIAKVDMHEAYFGYRGNYDADIAVVTLDRPIVYHPHIAPICLNLNLKTLIEKQAPPHGTMGLVVGYGYTEADGQPSDRLKKIEMPIVETRQCKEEASDGFKPFVTSDKFCAGYNDGTGGVCRGDSGAGFVTGRTVDGETVYHIHGIVSNTRLANGGCDLNFYTMFTHVQNYVDLIKHVIEDSKSEG
| Type | Start | End | Length |
| CDS |
63722 |
63725 |
4 |
| CDS |
63788 |
63876 |
89 |
| CDS |
64043 |
64235 |
193 |
| CDS |
64301 |
64714 |
414 |
| CDS |
64776 |
65458 |
683 |
| intron |
63726 |
63787 |
62 |
| intron |
63877 |
64042 |
166 |
| intron |
64236 |
64300 |
65 |
| intron |
64715 |
64775 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_321263 |
AGAP001798-PA [Anopheles gambiae str. PEST] gb|EAA01121.5| AGAP001798-PA [Anopheles gambiae str. PEST] |
1e-58 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR000436 |
Sushi/SCR/CCP |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR016060 |
Complement control module |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00084.15 |
Sushi domain (SCR repeat) |
0.002 |
| Pfam |
PF09342.6 |
Domain of unknown function (DUF1986) |
0.0044 |
| Pfam |
PF00089.21 |
Trypsin |
1.3e-37 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC030066 |
| T. castaneum |
TC030068 |
| P. vanderplanki |
Pv.02323 |
| T. castaneum |
TC030067-GA |