MidgeBase gene description page [Pn.04590]
Outline
| Gene ID | Pn.04590 |
| Type | Protein coding gene |
| Scaffold | PnScaf3881 |
| Start | 8143 |
| End | 11285 |
| Direction | - |
Sequence
Transcript: 2541 (bp)
ATGCTAATTCAAGAACCTGTGCAGGTTGCTATTTGGACAAATTTAAATTTCTACGCTTTTGAAGATGCAATTTTCTTGGCCGAGAGACTATTAGCAGAAGTGGAGACAGATGAAAGTTTGTACTTGCTCGCGACTTGTTATTATCGATCGGGAAGAACAAATGAAGCATATTGGCTGCTTCACTCGAAAGGAGCATCAACACACAAGTCAAAGTTTCTTCTAGCAAAATGTGCATTCGAGCTAAAACACTACTCAGAAGCAGAAAACATTTTATGTAACAACAAGACCCCGAAATCGCAAAAGGATCTCGACGCACTGGCGAAGGAGTACGGCATCGAGCTGAGCGGATATGTGATGCAGTTGCTCTCGAAAATCTACCGACAAACGGAGCGCTCGATGCTCGCAAACGACTGCTGCAGGGCGTCGCTGAAGAGCAATCCCTTCCTGTGGCACTCGTTCAGCGACTTGTGCAATCGCGGCGAGCGGCCGAACGTGAAGGAGATCTTCCAGATCCGGAGCGACGAGTTGCTAGTTCAATTAGAGAATCAATTGTTAAATAATATTCCCAACGCCGCCGAGCGCACCAGCGGCGCCGCCAACGAGAACAATATCAGTATTTCAGGATTACAGCAGAGTTGTATTAACACACCAAATAATAACATCATGACAACGGCCCATCACTTCAACAATGTAAATACGACGACGACGACGGCCGATGACACGCCGCTCATCGAGAACCAGACCGTGGGAGTGCAATTTTTCGAGGTGGAAACGCCGTACCACAAGCAGTTCAAGTATCTCAATCTCAACCTGAGTCCGGTGACGCCGAGCTTCGGCGTGCTGCCGCTCAGCAGTCCCGTCGTCGGCGACAGCCTCAAGCAAACGACCCTGTTCATCACGCCGTCACCGCCACTGCAACAAAACCAACAATCTCAGCTAATCGACACCGACAAGAACATTAGCAATAAGAAAATCCGAGGGAACCTCAACTCCCTCGTCAACCGCAAGGAGATCACGACCACCACGCCCCTCCAGCAGACGCAGCAGTCGAAGCCGCCGGTCGTGCTGAATCAGTCGAGCAACATCGCGTCGCCGAACCGGACGCCGCAGGAGCAGCGCAACCAGAACGTCCGTCGCTCGTCGCGCATCTTCAGTAACTACTCCGTGAAGGAGAACAACAAGTCGCCAAAGTTCTCGAAGTTCGTGCAGCCGCGCTCGCCGCCGCGCAAGACGAGCAAGCGCGTCTCGAAGTCCTCGAAGTCGACGCTCAACGAGCTCAACGAGAAGAACACGATTCTCAACGAGAAGGAGAAAATCGAGACGGTGACGTCGGCGCAGGCGAAGGCCGTGGGCTGCGAACAAAGCATGCTTCAGATGAAGCGGCAGAGCGCCGACGGGCTGATGATTCTGCTGCAGTCGCTGGGCGAGGCATACATGCACCTGCAGCACTACGAGCTCGAGGAGGCGCTCGAGATCTTCGAGACGCGCGTGCCGCTGCATCACTTCAACAGCAGCTGGGTGCAGTCGCTGATAGCTTTAATTCACCACGAGAGGCGCGAGTACGAGCAGGCCGTGAAGATTTTCGGGAAAATACACGAGCGCGAGCCGTATCGCTTGCAATATTTGGAGATTTACAGTACTGACCTGTGGCACTTGCAGAAGGAGACGCTCCTGTCCATTTTGGCGCAGGACCTCATGCAGCACAGCAAAAACTCCGCCGTGACATGGTGCGTCGCGGGCAATTGCTTCTCCGTTCTCAAGGAGCACGACACCGCCATCAAGTTCTTTAACCGGGCGATTCAGCTCGATCCCGAATTCTCGTACTCGTACACGCTCCTCGGTCACGAACTCGTGGTGACGGAGGAGCTCGAAAAAGCCCTCGGCTGTTATCGGAAAGCGATTCTCAAGGACTCGCGTCACTACAACGCTTGGTACGGAATCGGTACGATTTACTCGAAGCAAGAGCGCTTTCAACTGGCCGAGATTCACTTCCGACAAGCACTGAAGATCAATCGAAAGAACTCGGTCATTTTGGTTCACATAGGCGTGATGCAGTTTTACTTAAACAAACGTGAGCAGGCAATTCAGACGATGTTGGACGCGATCAAGCTCGACCCGAACAATCCGCTGTGCAAGTTCCATCACGCCTCGATGAACTTCAACATCGGCAAGCTGCATGAGGCGCTCGAGGAGCTGGAGGAGCTGAAACAAATCGTGCCAAAAGAATCTGTAGTGTTTTATCTCATAGGAAAAATCCACAAACAACTCGGAAACATTGATCTTGCCTTGATGCACTTCAGCTGGGCCACGGACTTGGATCCGAAGGGAGCGAACAACCAGATAAAAGACAAATTCGATTCGGTAATAAGATCTCATCAGCAGACCGAGCCGTCCGATGGCGATGTGAGGTCGCGCGAGGAGTTTGACGACGACGACGACGTCTCACTGGACGAGGAGGACATCGATGCCACAACATCGAACGACAATAACAACAGCAGCGGTGGCCTCGAGGAGTCGGAGATGAGCATGAATCAGGATCAT
Protein: 847 (aa)
MLIQEPVQVAIWTNLNFYAFEDAIFLAERLLAEVETDESLYLLATCYYRSGRTNEAYWLLHSKGASTHKSKFLLAKCAFELKHYSEAENILCNNKTPKSQKDLDALAKEYGIELSGYVMQLLSKIYRQTERSMLANDCCRASLKSNPFLWHSFSDLCNRGERPNVKEIFQIRSDELLVQLENQLLNNIPNAAERTSGAANENNISISGLQQSCINTPNNNIMTTAHHFNNVNTTTTTADDTPLIENQTVGVQFFEVETPYHKQFKYLNLNLSPVTPSFGVLPLSSPVVGDSLKQTTLFITPSPPLQQNQQSQLIDTDKNISNKKIRGNLNSLVNRKEITTTTPLQQTQQSKPPVVLNQSSNIASPNRTPQEQRNQNVRRSSRIFSNYSVKENNKSPKFSKFVQPRSPPRKTSKRVSKSSKSTLNELNEKNTILNEKEKIETVTSAQAKAVGCEQSMLQMKRQSADGLMILLQSLGEAYMHLQHYELEEALEIFETRVPLHHFNSSWVQSLIALIHHERREYEQAVKIFGKIHEREPYRLQYLEIYSTDLWHLQKETLLSILAQDLMQHSKNSAVTWCVAGNCFSVLKEHDTAIKFFNRAIQLDPEFSYSYTLLGHELVVTEELEKALGCYRKAILKDSRHYNAWYGIGTIYSKQERFQLAEIHFRQALKINRKNSVILVHIGVMQFYLNKREQAIQTMLDAIKLDPNNPLCKFHHASMNFNIGKLHEALEELEELKQIVPKESVVFYLIGKIHKQLGNIDLALMHFSWATDLDPKGANNQIKDKFDSVIRSHQQTEPSDGDVRSREEFDDDDDVSLDEEDIDATTSNDNNNSSGGLEESEMSMNQDH
| Type | Start | End | Length |
| CDS |
8146 |
8369 |
224 |
| CDS |
8461 |
8846 |
386 |
| CDS |
9065 |
10747 |
1683 |
| CDS |
10889 |
11036 |
148 |
| CDS |
11114 |
11189 |
76 |
| CDS |
11262 |
11285 |
24 |
| intron |
8370 |
8460 |
91 |
| intron |
8847 |
9064 |
218 |
| intron |
10748 |
10888 |
141 |
| intron |
11037 |
11113 |
77 |
| intron |
11190 |
11261 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308181 |
AGAP007690-PA [Anopheles gambiae str. PEST] gb|EAA04651.4| AGAP007690-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR001440 |
Tetratricopeptide TPR-1 |
|
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| InterPro |
IPR013105 |
Tetratricopeptide TPR2 |
|
| InterPro |
IPR013026 |
Tetratricopeptide repeat-containing domain |
|
| InterPro |
IPR019734 |
Tetratricopeptide repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF07719.12 |
Tetratricopeptide repeat |
9.7e-30 |
| Pfam |
PF13174.1 |
Tetratricopeptide repeat |
5.7e-12 |
| Pfam |
PF13176.1 |
Tetratricopeptide repeat |
3.5e-10 |
| Pfam |
PF03704.12 |
Bacterial transcriptional activator domain |
0.052 |
| Pfam |
PF12895.2 |
Anaphase-promoting complex, cyclosome, subunit 3 |
5.3e-26 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
1e-13 |
| Pfam |
PF13424.1 |
Tetratricopeptide repeat |
2.2e-19 |
| Pfam |
PF13432.1 |
Tetratricopeptide repeat |
5.5e-20 |
| Pfam |
PF00515.23 |
Tetratricopeptide repeat |
2.4e-36 |
| Pfam |
PF13414.1 |
TPR repeat |
1.5e-33 |
| Pfam |
PF13374.1 |
Tetratricopeptide repeat |
0.0008 |
| Pfam |
PF14297.1 |
Domain of unknown function (DUF4373) |
0.01 |
| Pfam |
PF13431.1 |
Tetratricopeptide repeat |
3.6e-16 |
| Pfam |
PF13181.1 |
Tetratricopeptide repeat |
4.3e-24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV10210-PA |
| A. aegypti |
AAEL002708 |
| A. gambiae |
AGAP007690 |
| H. sapiens |
ENSP00000432105 |
| D. plexippus |
DPOGS213547PA |
| M. musculus |
ENSMUSG00000020687 |
| A. mellifera |
GB16427-PA |
| H. melpomene |
HMEL017908-PA |
| B. mori |
BGIBMGA011827-TA |
| H. sapiens |
ENSP00000066544 |
| T. castaneum |
TC000032 |
| A. aegypti |
AAEL014508 |
| S. invicta |
SI2.2.0_00969 |
| P. humanus |
PHUM280670-PA |
| H. sapiens |
ENSP00000437339 |
| A. aegypti |
AAEL012735 |
| C. quinquefasciatus |
CPIJ010556 |
| P. vanderplanki |
Pv.02495 |
| H. sapiens |
ENSP00000392802 |
| H. sapiens |
ENSP00000434614 |
| C. quinquefasciatus |
CPIJ010555 |
| D. melanogaster |
FBgn0012058 |