MidgeBase gene description page [Pn.04564]
Outline
| Gene ID | Pn.04564 |
| Type | Protein coding gene |
| Scaffold | PnScaf3847 |
| Start | 42070 |
| End | 45624 |
| Direction | - |
Sequence
Transcript: 2055 (bp)
ATGTCCGCTCCAGCCGAAAACATTGAGCAGTTGTTCCACGACGATCCATGGCTCCGCCCGCACGAACACGAAATCAGGAGAAGACACGGCATCGTCAAGGACTGGCTGAGGCGCATCAACGAGTCGGAGGGTGGATTGGAGAACTTCTCGCAGGCCTACAAATACTACGGCATTCACATCCAGCAAGACAATTCTGTCATTGCGCGTGAGTGGGCGCCAGGCGCGAAGGAGTTGTACTTAACCGGCGACTTCAACAACTGGCATTGGGAGGCTCATCCCTACAAAAAGCTGCCGTTCGGCAAGTGGGAGCTTACGCTGCCGCCGCGCGAGGACGGAACGCCGCAGATTCCGCATATGTCGGAGGTCAAAGTAATTGTTCGCAAGCACAGCGGCGAGCTCGTCGATCGCTTATCGCCGTGGGCGACGTACGTCGTGCAGCCGCCGAAGGAGGCCAATCAGGGCACGAATTTCAAGCAGTACGTGTTCCAGCCGCCGGGACATTCGAAATACCACTTCCGGCACAAGCGACCGAAGGCGCCGCGCTCGATGCGCATCTACGAGTGTCACGTGGGCATCGCGACCGAGAAGTACGAGGTCGGCTCGTACAGGGACTTCGCCGATAACATCATCCCGCGGATCGTGCGACAAGGCTACAATGTCATCCAGGTGATGGCCATCATGGAGCACGCCTACTATGCGAGCTTCGGCTATCAGGTCACGAGCTTCTATGCGGCGTCGTCGCGCTGCGGAACGCCCGACGATCTCAAGTACATGATTGATGTCGCTCACAAGCACGGCATTTTCGTGATGCTGGACGTCGTTCATTCGCATGCGAGCAAGAATGTCTGCGATGGACTGAACCAGTTCGACGGCACAAATGCCTGCTTCTTCCACGATGGCGGTCGGGGCGAGCACACGTTGTGGGACTCGCGCTTATTTAATTACACGGAATTCGAAGTTATGCGCTTTTTAATCTCCAACCTTCGCTGGTGGCACGATGAATATCAATTTGATGGCTATCGCTTTGACGGCGTTACGTCGATGCTCTATCACTCGCACGGCATTGGCGAGGGATTTTCGGGCGATTACAACGAATATTTCGGACTTAACGTCGACACAGATGCCTTCGTTTATCTCGCTTTGGCAAATAAGTTCCTGCACGACTTGGATCCGAATGTCGTGACCATCGCGGAGGACGTGAGCGGAATGCCGAGCTTGTGTCGTCCGTTCCACGAGGGCGGAGGCGGTTTCGATTTTCGCCTGGGTATGGCCATTCCCGACAAGTGGATTAAAGTGCTGAAGGAGCAGTCGGACGAGAACTGGGACATCGGAAACATCGTGCACACGCTCACGAATCGCCGCTGGAAGGAGAAGACGGTCGCGTATGCCGAGAGCCACGATCAGGCGCTCGTCGGCGATAAGACGATAGCCTTTTGGCTTATGGATAAGGAAATGTACTGGTTCATGTCGACGCTGTCCGATCAATCGATGATTGTCGATAGAGGCATCGCATTGCATAAGCTCATTCGTCTGATTACGAACGCGCTCGGCGGCGAGGCCTACTTGAACTTCATGGGCAACGAGTTCGGCCATCCCGAGTGGCTCGACTTCCCGCGCTTCGGAAACGGCGAGTCCTATCACTACTGCCGTCGCCAGTGGAGCCTCGTCGACGATGAGCTGCTGAAGTACAAATTTCTCAACAACTGGGACCGTGCGATGAATTTCACCGAGGAGAAGTACAATTGGCTGAGCAGCAATGACTCGGGCTATGTCAGCTGGAAACATCAGGACGATAAAGTTGTTGCATTCGAGCGTGCCGGTCTCGTGTTTGTCATTAATTTTCATCATCACAAGAGCTTCACCGATTATAAAGTCGGCGTCGAGGTCCCGGGCAAGTACAAGATTGTGCTGAACTCGGACGCCACCGAATTCGGCGGCTTCAATCGCATCGACACGAGCAACGTTCACCAAACTTTTCCCGAAGGCTACGCCGGTCGTCGTAATCACATGTGCGTTTATATTCCGAGCCGCACCGCAATCGTTCTCGCCAAAGTC
Protein: 685 (aa)
MSAPAENIEQLFHDDPWLRPHEHEIRRRHGIVKDWLRRINESEGGLENFSQAYKYYGIHIQQDNSVIAREWAPGAKELYLTGDFNNWHWEAHPYKKLPFGKWELTLPPREDGTPQIPHMSEVKVIVRKHSGELVDRLSPWATYVVQPPKEANQGTNFKQYVFQPPGHSKYHFRHKRPKAPRSMRIYECHVGIATEKYEVGSYRDFADNIIPRIVRQGYNVIQVMAIMEHAYYASFGYQVTSFYAASSRCGTPDDLKYMIDVAHKHGIFVMLDVVHSHASKNVCDGLNQFDGTNACFFHDGGRGEHTLWDSRLFNYTEFEVMRFLISNLRWWHDEYQFDGYRFDGVTSMLYHSHGIGEGFSGDYNEYFGLNVDTDAFVYLALANKFLHDLDPNVVTIAEDVSGMPSLCRPFHEGGGGFDFRLGMAIPDKWIKVLKEQSDENWDIGNIVHTLTNRRWKEKTVAYAESHDQALVGDKTIAFWLMDKEMYWFMSTLSDQSMIVDRGIALHKLIRLITNALGGEAYLNFMGNEFGHPEWLDFPRFGNGESYHYCRRQWSLVDDELLKYKFLNNWDRAMNFTEEKYNWLSSNDSGYVSWKHQDDKVVAFERAGLVFVINFHHHKSFTDYKVGVEVPGKYKIVLNSDATEFGGFNRIDTSNVHQTFPEGYAGRRNHMCVYIPSRTAIVLAKV
| Type | Start | End | Length |
| CDS |
42073 |
42251 |
179 |
| CDS |
42364 |
43195 |
832 |
| CDS |
43531 |
44321 |
791 |
| CDS |
44406 |
44575 |
170 |
| CDS |
45542 |
45624 |
83 |
| intron |
42252 |
42363 |
112 |
| intron |
43196 |
43530 |
335 |
| intron |
44322 |
44405 |
84 |
| intron |
44576 |
45541 |
966 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001959638 |
GF11944 [Drosophila ananassae] gb|EDV36460.1| GF11944 [Drosophila ananassae] |
0.0 |
| InterPro |
IPR014756 |
Immunoglobulin E-set |
|
| InterPro |
IPR004193 |
Glycoside hydrolase, family 13, N-terminal |
|
| InterPro |
IPR015902 |
Glycoside hydrolase, family 13 |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR006048 |
Alpha-amylase, C-terminal all beta |
|
| InterPro |
IPR006589 |
Glycosyl hydrolase, family 13, subfamily, catalytic domain |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR013780 |
Glycosyl hydrolase, family 13, all-beta |
|
| InterPro |
IPR006047 |
Glycosyl hydrolase, family 13, catalytic domain |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00128.19 |
Alpha amylase, catalytic domain |
2.7e-11 |
| Pfam |
PF02922.13 |
Carbohydrate-binding module 48 (Isoamylase N-terminal domain) |
8.7e-14 |
| Pfam |
PF02806.13 |
Alpha amylase, C-terminal all-beta domain |
1.4e-23 |
| Pfam |
PF00266.14 |
Aminotransferase class-V |
0.11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB10129-PA |
| A. gambiae |
AGAP010428 |
| A. mellifera |
GB12103-PA |
| H. sapiens |
ENSP00000419638 |
| S. invicta |
SI2.2.0_12923 |
| M. musculus |
ENSMUSG00000022707 |
| H. sapiens |
ENSP00000410833 |
| B. mori |
BGIBMGA007451-TA |
| P. vanderplanki |
Pv.17595 |
| D. melanogaster |
FBgn0053138 |
| H. melpomene |
HMEL008356-PA |
| N. vitripennis |
NV13888-PA |
| C. quinquefasciatus |
CPIJ006166 |
| A. aegypti |
AAEL011686 |
| T. castaneum |
TC004619 |
| A. aegypti |
AAEL010602 |
| D. plexippus |
DPOGS215494PA |
| P. vanderplanki |
Pv.03290 |
| P. humanus |
PHUM033940-PA |