MidgeBase gene description page [Pn.04552]
Outline
| Gene ID | Pn.04552 |
| Type | Protein coding gene |
| Scaffold | PnScaf3846 |
| Start | 34916 |
| End | 37701 |
| Direction | + |
Sequence
Transcript: 2634 (bp)
ATGCAGAGCACCAGTAGCACTTCGAAGTTCCTCGAATCGATATTTGAAGATACCGACAGTAATCAAGCCGGAATCAAAACGCTAGTCAATGAAGAGTGTATCAATAAACTCAAAAGTTTTACAATTCCTACTCGAATAAACGTTTCCACTGGAGAACATTCAATAGTTCTTAATGGTGGCTTTCAAGCATTCACTCCACTAGTGCTGCCATCCTCTCGGAACTTGGATCCTGCTAATGATTGTTGGCACGCAATATTGATATACCATGGAGGATTTGCGACAAAGGCAGACATTCTTAACGAACTGTTTGATGTTGCTGACACAGCTTTTTTTGTCCCGATGGCTTATCGAAGGGAAAAGAAAGTGGACTTTTTCTTTATTTGCAAACAAACTGAATTTCTGGAAAAGCTGCTTTTTGAAAAGTCACTACAGATTACAGTTAATCAAGTAGTTTTACCGATGGTTATGAAAATGAACGTTTCAAACTTTCATGAAGGACAATTGAAGCCAATTAAGTGTATTCTCTCGCTCATAATCAGAAAGATGAATGAGTCTAATCCCAACGTACTTGATTTCTCAAACGTTACGAAAGAAAAAGAAATGGCCGAATGCTTCATTTCTCTTCGAAACAAAGCTGTTCTTATGATGTTTCTCGATCAGTTAAACTCGATGAAAAATCTCAAAGCGAGTGTTCGAATTTTGAAACTTGATGATAACCATATTCGGACACTGGAGCCTTTTCAATCAAAACTTTATGGATTTAACAATATCAAGATCCTTTCATTGACAAAAAATAAACTTAAAGATATCTACGAATTAAAACATCTAAAAAATTTGATGCTGGACGAGATATACGTAGAAGGAAATTTTGGAGTGCAAACTTCGAAAGCATTATTGATCAAGTACAACGAATCAAAGATTCAAGATCTGCTACCGACACTAAAAAAAATCAACGGTATTGCTCTAACAAATGCTGTACCTTATTTAATTGGCGAGGGCAAAAATGGAAATCGCGAAATAGAAAACGTTGGAGATGGCGTGCTTATTAACCAATCAAACGTTAAAAACTATAAATTCGAAAAACTCTTGAAGGATTATTGTTGGACTAAAGTAAAATTCGTACACAACAAGAAGTTTAGCTCCACCGAAATTCTTAATCATCTAACATCAACCATTCTCAAGGATGTGTTTTTCTTCCCTTGCTACTTCAAGCGCATCAGATATTTTGACGAATTCTTTCTTTACAAAAACCCGGATGCACTTGCAATTTTGTTCAATTTACCGGGGCTTAAGATACAGATGCCTACATCATACAACTTTGATGTTCGAAATTCGTTTCCAATATCAATTTCTTTTAACTTTAACTGTGCTGAGTTCAACGAAAATGAAGTCTTTTGGTGGTCGAAAATTATCAAAGCAGTTGGGAATAGCATTAAGGATAACGTGCTGGACCTTAATAATTTTCCGCGACGTGAAGACTTTGACAAAATACTTATTTCAATGAATTCAACCAAAACGATCGATTTTATTATGACACAAGCCAAAAAGATTAATCCAAATATTACCAGAATTGATTTTGAAAATTGTGACCTAATGAATTGTGAGGGTTTTCATTTTGTTTTTACCCTTTCAAAGCTTACATTAATCAATCTGCGTAACAACAAGTTAACTTCTCTTTATGGCTTCAAACGTTGTCCATCAATTTGCGAAATTCTTCTCGATGGTAATCCAATGTGCAACAAGTCACCAAATGAGTACATTCGTCAAGTTATTGAGTACCTTCCGGACATTAAAAAAATTGATGGCGTGCAGCTGCAATCAATGGTATTGCTTGCGAATTTTCAAAATTACCTTGCAAATACTGCTTGTTACCATCTCGTCAACTCTTTTATCAAGACCTTTTTCGAGACATGGGACTCCTTCGAACGAATGAAGATTCTAGACATGTATAACAACAAATCTATCATGACTTTATCCATTCACGTTGAATATCGTGAGCAAAATTCGACGTTAACCTTCAGCGGAGTATATCCTCGCGTACAGACGCTTGTTGCTATGGGACGCAATTTACTGAAAATTTCAAATATGAACCAAGTTTGTCATAATGTTTTTATCGGAAAGGACATCCAGAAGGTATTTTATACTATTTTGAGAACAAAGCATAACTTTACGACGTTTACGATCGACGTTCCTCTCTACGAACCTGATTTGGGACGAATGATTTTGGTTGTACGAGGGGCATTTGAAGAATTTGAAAGTGATATAGCAACTTCGTCAATCATTTATGGATTCACTCGTCAGTTTTGTCTGATGTCCACGGCTGACGGTATTATAAATGTACAAAATGATCAGTTAACGATTTGCTGTCCAAGTGACGAGCAACGGCTGGCAATTAAAGACAACATTCAGCCAGCAACCGACAAAGAGGTTCAAGAAACCTGTCGAGACTTGATACCGACTGCATGTGAAGAGCATACAGCGAAGCTGTTTATACTGCAAGAGTTGACAAAGTGTTCAAAAGAGTTTTGCCAACAGTTACTGAAGGATAGCTGCTATGATTTAAAGGTGGCTCTGGCCTGCTTCAACACTTATATCGATGCAAATCAAATTCCAGACGATAAGTTTATTTTTAAT
Protein: 878 (aa)
MQSTSSTSKFLESIFEDTDSNQAGIKTLVNEECINKLKSFTIPTRINVSTGEHSIVLNGGFQAFTPLVLPSSRNLDPANDCWHAILIYHGGFATKADILNELFDVADTAFFVPMAYRREKKVDFFFICKQTEFLEKLLFEKSLQITVNQVVLPMVMKMNVSNFHEGQLKPIKCILSLIIRKMNESNPNVLDFSNVTKEKEMAECFISLRNKAVLMMFLDQLNSMKNLKASVRILKLDDNHIRTLEPFQSKLYGFNNIKILSLTKNKLKDIYELKHLKNLMLDEIYVEGNFGVQTSKALLIKYNESKIQDLLPTLKKINGIALTNAVPYLIGEGKNGNREIENVGDGVLINQSNVKNYKFEKLLKDYCWTKVKFVHNKKFSSTEILNHLTSTILKDVFFFPCYFKRIRYFDEFFLYKNPDALAILFNLPGLKIQMPTSYNFDVRNSFPISISFNFNCAEFNENEVFWWSKIIKAVGNSIKDNVLDLNNFPRREDFDKILISMNSTKTIDFIMTQAKKINPNITRIDFENCDLMNCEGFHFVFTLSKLTLINLRNNKLTSLYGFKRCPSICEILLDGNPMCNKSPNEYIRQVIEYLPDIKKIDGVQLQSMVLLANFQNYLANTACYHLVNSFIKTFFETWDSFERMKILDMYNNKSIMTLSIHVEYREQNSTLTFSGVYPRVQTLVAMGRNLLKISNMNQVCHNVFIGKDIQKVFYTILRTKHNFTTFTIDVPLYEPDLGRMILVVRGAFEEFESDIATSSIIYGFTRQFCLMSTADGIINVQNDQLTICCPSDEQRLAIKDNIQPATDKEVQETCRDLIPTACEEHTAKLFILQELTKCSKEFCQQLLKDSCYDLKVALACFNTYIDANQIPDDKFIFN
| Type | Start | End | Length |
| CDS |
34916 |
34982 |
67 |
| CDS |
35071 |
37537 |
2467 |
| CDS |
37599 |
37698 |
100 |
| intron |
34983 |
35070 |
88 |
| intron |
37538 |
37598 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651793 |
nuclear RNA export factor 2 (NXF2), putative [Aedes aegypti] gb|EAT42411.1| nuclear RNA export factor 2 (NXF2), putative [Aedes aegypti] |
3e-72 |
| InterPro |
IPR018222 |
Nuclear transport factor 2, Eukaryote |
|
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| InterPro |
IPR009060 |
UBA-like |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
3.2e-08 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
3.2e-06 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
0.043 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL006050 |
| P. vanderplanki |
Pv.04574 |
| A. gambiae |
AGAP002004 |
| C. quinquefasciatus |
CPIJ012645 |
| D. melanogaster |
FBgn0036640 |