MidgeBase gene description page [Pn.04400]
Outline
| Gene ID | Pn.04400 |
| Type | Protein coding gene |
| Scaffold | PnScaf3640 |
| Start | 23468 |
| End | 26431 |
| Direction | + |
Sequence
Transcript: 2532 (bp)
ATGGATCTAATTACTGTGCCTTTGAAAAAACCAAGTGAAGTTGATTTGGTAAAGCCACTGAAAAATCTCATTCAGAGCACAAATGTAAAGCCTGCGGATAACTCACAAATTGAAAAGATAAATTCCTTTAACAAGCAAAGAAATCATGCAGTTTTCAAGGTCTTTGAGAAAAATGATGCTGCTTTGGAGGCAATCTATGCGTACTACGATCAGTTGAATGCCCTGGAAGTCAAAATTCCGGTTCACGAATTCCAAGTACCGTTCAAATACAAAGACGCATTTGACAAAGGATCTATTTTCATGGGTCGAGCGAGCATGACCCTCTCGTCGCTGGCGTTTGAGAAGGTGTGCGTGCTCTTTAACATCGCCGCTCTACAGAGCTCGATTGCGGCCGCTCAGTGCTTTGACAGCGACGATGGGTTGAAGACAGCGGCGAAGCTTTTCCAACAAGCAGCTGGCATATTTTCTCATCTCAAATCTGCAGCACCGGCACTCGGTCAAGAGCCAACACCCGATTTGTCACCAGATACCCTTCACGTTTTATCGATTCTCATGCTCGCACAAGCACAGGAGATTTGTTTATTCAAAGCAATAAAGGACGGAATGAAGGATCAAGTAATTGCAAAGCTAGCATGTCAAAATGACGAAATGTATGCTGACGTGATGAAGGCTATGCAAAAGGACGGCTTGAAAAATCTGTTTGACAGAGAATGGCTTCAGACTGTGACTGGAAAGCAAGCCGGTATTCATGCAATCACTCTTCTTTACCAGGCGAATGTTTTTAACACTGCAAAGAAAATTGGTCACCAGATTGCTGCCCTTCAGAAGTCAATTGATCTGTTCAAAACAGCATCATCTCGTGCTGGAAAGCCCATTTTTGAAGAGTACAACAAGAAGGCGCAGATCAAACTCGTCGAGGCCAAGAAGGAAAATGATTTCATCTACAATGCCACGATTCCGGACTCGTCCACTCTTGAGTCATCAGGAAAGTTTCAATTGGCCAAGGCTATTCCAATCACATCACCCATGAGCTCCAATTTCAAAGACTTGTTTAGCGATTTGGTTCCGGTCGCGTTGCAGCATGCATTGCAAGCATGTGATGCTCAAAAGTCCGAGATTGTTAATGCTGAAATAATGAAATTGCGTGATGCAACGCAAACACTCAACGGTGTTCTCTCAAGCTTAAATCTGCCAGCAGCTATTGAGGTCGCAACTCCAGGCTCGAGTGTACCGCCTTCCATCTTGGAGAAGGCCAACGAAGTCCGAGACAAGGGAGGCATCCAGAGCATTCGCACTCTCATCGAGGAACTCCCAGAGTCGCTCACAAGAAACAAGGAGATTCTCGATGAGACTGAGCGAATGCTGAATGAAGAAAAAGAGTCAGATGATCAACTTCGTGCGCAATTTAAGGAAAAGTGGACGCGCACTTCGTCTGAAAAACTGACTGAGATGTTTAGATCGAGTGCATCAAAATATCGCGAAATTATTACAAACGCTATTTCTGCAGACAAGGTTGTTCGTCAGAAATTCGAGAGTAACCTTCATGGAATGGAAATATTATCGAAGCCAGCCAATGAGCTGCATCAAGCGATTCCCGCGGCCAGCGGAACCGTCGCAAGCTGCCCATCAGTTGTAAAACTGCGCGCTCTGATGGAGGCAGTCGAAACAATGAAGGTCGAGAGAGATGTCATTGAATCGGAATTGAAATCGGCAACTGTCGACATGAAGGATCAGTTTTTGAATGCTCTCGCTCAGGACGGCGCCATCGACCCGAATGTGACGATTTCTCACGTCGGCAAAGCTTTGTCTCCGCTCCAGAAGCAAGTTGGTGACAGTGTTAGTCGCCAGCAAGCACTCATCCAAGAGATCCAAGACGCTCACAGCGCATTCACTGCTGAATGCGGTTCAGGAACAAACCAGCGTGACCAAGTCACCTCGCAGCTGGCATCGGCATATGACATTTTCACAGAACTCCAGCATAATCTCAAGGAGGGAACAAAGTTCTACAACGACCTCACCCAACTGTTGATTGTTTTTCAAAATAAGGTGTCTGATTTCTGCTTTGCGAGAAAGACGGAAAAGGAAGAACTGCTAAAAGATTTGACTGCCGAGTCGTCTCGTGTCGCATCAGGCTTTCAACAGCCATCCATTCCAAGTCATCACGGTTCAGCTCCAACGGGAACTAAATCTCCTCCACCAGCTCGGCCGCCACCTCCGCAAGTGCAGGACGCTCAGTCAAGTGTGCCTGCAATGCCACCAAGTGCGCCTGGTGCTCCTTACCCCGTTCAAATGCAAGGCATGCCGACTCCAATGATGAACTACAGCTACATGCCTCCGCTGCCTGCTTCATTCAATCCCTACGCCACACTGCCGCACGGAACAATTCCCTATCCAACAGCGTTCAGCTTTCCGCAAGCTCCCGGAGCTCAATACTATGGAACTTATCCTGGAACGTATGCACAACAAATTCAGCAAGCAAACTACCCTCACGGACCGCAACCAACACCGGATCCCAATAAACCATATGGCTTC
Protein: 844 (aa)
MDLITVPLKKPSEVDLVKPLKNLIQSTNVKPADNSQIEKINSFNKQRNHAVFKVFEKNDAALEAIYAYYDQLNALEVKIPVHEFQVPFKYKDAFDKGSIFMGRASMTLSSLAFEKVCVLFNIAALQSSIAAAQCFDSDDGLKTAAKLFQQAAGIFSHLKSAAPALGQEPTPDLSPDTLHVLSILMLAQAQEICLFKAIKDGMKDQVIAKLACQNDEMYADVMKAMQKDGLKNLFDREWLQTVTGKQAGIHAITLLYQANVFNTAKKIGHQIAALQKSIDLFKTASSRAGKPIFEEYNKKAQIKLVEAKKENDFIYNATIPDSSTLESSGKFQLAKAIPITSPMSSNFKDLFSDLVPVALQHALQACDAQKSEIVNAEIMKLRDATQTLNGVLSSLNLPAAIEVATPGSSVPPSILEKANEVRDKGGIQSIRTLIEELPESLTRNKEILDETERMLNEEKESDDQLRAQFKEKWTRTSSEKLTEMFRSSASKYREIITNAISADKVVRQKFESNLHGMEILSKPANELHQAIPAASGTVASCPSVVKLRALMEAVETMKVERDVIESELKSATVDMKDQFLNALAQDGAIDPNVTISHVGKALSPLQKQVGDSVSRQQALIQEIQDAHSAFTAECGSGTNQRDQVTSQLASAYDIFTELQHNLKEGTKFYNDLTQLLIVFQNKVSDFCFARKTEKEELLKDLTAESSRVASGFQQPSIPSHHGSAPTGTKSPPPARPPPPQVQDAQSSVPAMPPSAPGAPYPVQMQGMPTPMMNYSYMPPLPASFNPYATLPHGTIPYPTAFSFPQAPGAQYYGTYPGTYAQQIQQANYPHGPQPTPDPNKPYGF
| Type | Start | End | Length |
| CDS |
23468 |
23667 |
200 |
| CDS |
23838 |
23956 |
119 |
| CDS |
24038 |
25783 |
1746 |
| CDS |
25849 |
25956 |
108 |
| CDS |
26011 |
26259 |
249 |
| CDS |
26319 |
26428 |
110 |
| intron |
23668 |
23837 |
170 |
| intron |
23957 |
24037 |
81 |
| intron |
25784 |
25848 |
65 |
| intron |
25957 |
26010 |
54 |
| intron |
26260 |
26318 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002105179 |
GD18063 [Drosophila simulans] gb|EDX14682.1| GD18063 [Drosophila simulans] |
0.0 |
| InterPro |
IPR025304 |
ALIX V-shaped domain |
|
| InterPro |
IPR004328 |
BRO1 domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF12795.2 |
Mechanosensitive ion channel porin domain |
2.3 |
| Pfam |
PF03097.13 |
BRO1-like domain |
1.1e-104 |
| Pfam |
PF13949.1 |
ALIX V-shaped domain binding to HIV |
2.6e-73 |
| Pfam |
PF11214.3 |
Mediator complex subunit 2 |
0.77 |
| Pfam |
PF12998.2 |
Inhibitor of growth proteins N-terminal histone-binding |
0.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA013462-TA |
| S. invicta |
SI2.2.0_03731 |
| D. plexippus |
DPOGS210539PA |
| A. mellifera |
GB11744-PA |
| P. humanus |
PHUM018060-PA |
| A. gambiae |
AGAP005531 |
| C. quinquefasciatus |
CPIJ018276 |
| N. vitripennis |
NV25554-PA |
| H. melpomene |
HMEL009549-PA |
| H. sapiens |
ENSP00000411825 |
| P. vanderplanki |
Pv.02595 |
| D. melanogaster |
FBgn0086346 |
| H. sapiens |
ENSP00000307387 |
| T. castaneum |
TC000807 |
| M. musculus |
ENSMUSG00000032504 |
| A. aegypti |
AAEL011271 |