MidgeBase gene description page [Pn.04398]
Outline
| Gene ID | Pn.04398 |
| Type | Protein coding gene |
| Scaffold | PnScaf3640 |
| Start | 15634 |
| End | 20808 |
| Direction | + |
Sequence
Transcript: 1155 (bp)
ATGAAGCTCGTTTACAAGAATATCGAGAAAGGTAATGGCTCGATAAAAATGGTACCAGAGGAACCGGAGGACATGTGGCACGCCTACAATCTTATCGCAATAGAAGATTTAGTCACAGCTACTACAATCCGAAAAGTCCAAACTGAATCGTCTACTGGAAGTTCGACATCCAGTCGAGTGCGAACAACGCTGACACTAAAGATTGAAAATATTGATTATGATACGCAGGCTTGTATGCTTAGATTAAAAGGGAGAAACGTCAGTGAGAATGATTACGTTAAGATGGGCGCTTATCATACGATAGACTTAGAACTGAATCGGGCATTTACGCTAACTAAGCCCGAGTGGGACTCGATTGCTCTCGAAAGAGTGGAAATGGCTTGTGATGTAGCGCAAAATGCTGATGTCGCCGCCGTCATCATGCAGGAGGGAATTGCTCATATTTGTCTCATTACGTCAAACATGACAATTGTGAGGAGCAAAATCGACATTGCTATTCCTCGAAAACGTAAAAACAACCCATCGCAGCATGAAAAAGGTCTAGCAAAATTCTACGAGGCAGTTATGACTGGAATATTGCGGCATGTGAATTTTGACGTCGTCAAATGTGTGCTCATCGCTTCGCCGGCTTTCGTAAAAGACGCATTCTATGAATACATGATTCAGCAAGCCACTCGTACCGACAACAAGCTCATCTTAGATAACAAAAGCAAGTTCATGCTTGTACACGCCTCGTCTGGATTTAAACATTCGCTAAAGGAAGTTCTCCAAGATCCCGCCGTCTTAGCCAAAATAAGCGATACGAAAGCAGCCGGTGAAGTTAAGAGATTAGAAGCCTTCTACACGATGCTGCAGTGCGAACCGGGAAGAGCGTTCTACGGCAAAAAACACGTGCAGAAAGCGATCGATGCGCAGGCTGTCGAAACACTATTAATCTCCGATAATCTATTTAGAAATCCGGATTTAATTCAGCGTAAAGAGTATGTTAAAATGCACGACGATGTACTCGATTCTGGTGGAGATGTGAAAATTTTCTCGAGCCTGCACGTGTCTGGTGAACAACTGGCGCAACTGACAGGCATTGCGGCGATTTTGAGATTTCCGATGCCAGAGCTAGAGGAAGACGACTCAGACGAGGAAAATTCTGATGCGGAT
Protein: 385 (aa)
MKLVYKNIEKGNGSIKMVPEEPEDMWHAYNLIAIEDLVTATTIRKVQTESSTGSSTSSRVRTTLTLKIENIDYDTQACMLRLKGRNVSENDYVKMGAYHTIDLELNRAFTLTKPEWDSIALERVEMACDVAQNADVAAVIMQEGIAHICLITSNMTIVRSKIDIAIPRKRKNNPSQHEKGLAKFYEAVMTGILRHVNFDVVKCVLIASPAFVKDAFYEYMIQQATRTDNKLILDNKSKFMLVHASSGFKHSLKEVLQDPAVLAKISDTKAAGEVKRLEAFYTMLQCEPGRAFYGKKHVQKAIDAQAVETLLISDNLFRNPDLIQRKEYVKMHDDVLDSGGDVKIFSSLHVSGEQLAQLTGIAAILRFPMPELEEDDSDEENSDAD
| Type | Start | End | Length |
| CDS |
15634 |
15671 |
38 |
| CDS |
15737 |
15833 |
97 |
| CDS |
15896 |
16042 |
147 |
| CDS |
16113 |
16783 |
671 |
| CDS |
20514 |
20620 |
107 |
| CDS |
20711 |
20805 |
95 |
| intron |
15672 |
15736 |
65 |
| intron |
15834 |
15895 |
62 |
| intron |
16043 |
16112 |
70 |
| intron |
16784 |
20513 |
3730 |
| intron |
20621 |
20710 |
90 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001847844 |
pelota [Culex quinquefasciatus] gb|EDS27039.1| pelota [Culex quinquefasciatus] |
1e-173 |
| InterPro |
IPR005141 |
eRF1 domain 2 |
|
| InterPro |
IPR005142 |
eRF1 domain 3 |
|
| InterPro |
IPR005140 |
eRF1 domain 1/Pelota-like |
|
| InterPro |
IPR004405 |
Translation release factor pelota-like |
|
| Pfam |
PF03465.10 |
eRF1 domain 3 |
1.6e-25 |
| Pfam |
PF03464.10 |
eRF1 domain 2 |
1.3e-32 |
| Pfam |
PF03463.10 |
eRF1 domain 1 |
1.7e-50 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB10750-PA |
| A. aegypti |
AAEL007854 |
| P. humanus |
PHUM437840-PA |
| D. plexippus |
DPOGS212122PA |
| M. musculus |
ENSMUSG00000042275 |
| S. invicta |
SI2.2.0_01881 |
| T. castaneum |
TC001682 |
| H. melpomene |
HMEL007734-PA |
| A. gambiae |
AGAP008269 |
| B. mori |
BGIBMGA006754-TA |
| P. vanderplanki |
Pv.02597 |
| H. sapiens |
ENSP00000274311 |
| N. vitripennis |
NV13121-PA |
| D. melanogaster |
FBgn0011207 |
| C. quinquefasciatus |
CPIJ801424 |