MidgeBase gene description page [Pn.04390]
Outline
| Gene ID | Pn.04390 |
| Type | Protein coding gene |
| Scaffold | PnScaf3633 |
| Start | 4368 |
| End | 6701 |
| Direction | + |
Sequence
Transcript: 1554 (bp)
ATGAGCACCTCACGACTCAATAGCGTTCAGCAGTTCTACAAAGATAAGACAATTTTCATAACTGGCGCGAGCGGTTTGATGGGCAAGGTGCTGCTCGAGAAACTCCTCTACTCGTGCTCCGAGCTCAAAGAAGTGATCATACTTATGCGGCCAAAGCGCGGCAAGAGCGAGGTCGATCGCGTCGCCGCCTTCTCGAAGCTTCCAATGTTCCAGAGAATCCTCAGCGAGAAGCCCTCGGTGATGAACAAAATCGTTCCAGTTTTCGGCGACATAACGCAGCCCTTTCTCGGCCTCAGCGACCAGCACCTGGAGAAGGTCCTCGAGTCGCATCTCGTCTTCCACGCCGCCGCTTCCCTCCGGCTCGAGTTCACGCTCAAGCCCAACGTCATCCTCAACCTCGTTGGGACGAAGAATGTCATCGACGTTACGAAAATGATGCCGAATCTGCGGCTCATGGTGCACTTCTCGACCGGCTTCTGCTGCCCCGACCAGGAGATTCTGGACGAGCGAATTGTCGAGTGGGAGGACGATCCGATGGACCTCATCCGGTGCTCCGAGTGGATGAGCGAGAGCGCAATGGCGAAAATGCAAAAGCACGTGCTGAAGGAGCACCCAAACACGTACACGTACACGAAGCGACTGGCGGAGATTCTGTGCCGGAACGAGTTCGAGAAGGGCTTGCGAATTTGCATCGCGCGCCCGTCAATCATCATTCCTGCACTCGCCGAGCCGGTCGTCGGCTGGATCGACTCGCTCAACGGTCCCGCCGGTCTGATGCTCGGCGCCGCCAAAGGCGTCATCCGCTCGATGCTCGTCGACGGCGACAGCGAAACTGAGGCCATTCCCGTCGACACGGCCGTCAACGGGATCATTTTGATCGCGAAAATTGTCGCAACGAGGGAGTCGTCGAAGGAAATCGAGGTGTTTAATGTCACCGCAAGCGAGAAGAAGAAGCGGAAGCTCGGCTATGTGCTGGAAGCGGCAAAGAAAGTAAACTTTGAGATTCCGGCTCAAATCGGTCTCTGGTATCCGGACGGGCAGATCACTACGAATAAAGTAAGACATAAAATCAATGTGGCTCTGTTTCACTGGCTGCCAGCTTACTTCATCGACTTTCTCATGCTTTGTTTCAGACAGAAGAGATTCATGGTGAGAATTCAGAATAGAATAAGCCAGGGCTTGGAAGTGCTGCAGTTCTTCACAATGAGAAACTGGATGTTCCGATCTGACAAGTTCAAAGCAATCAACAAGGAACTGTCGCCGGAGGAGTACAAAATGTTTTTCATAGACACCGAGTCAGTTCCCGATAGCTTCGAGGACGAATTCATAAGAAACTGCTTTCTTGGCGGGCGACTCTACGTCCTCAAAGAACCGATCGAAACGATTCCGAAAGCGAGAATTCAGATGAAAATCGCATACATTGTGGATCGCTTCTGCAAGCTCCTCATAATTTATTTCATGATAAAATGTCTTCTTCATCTCCTCACGCCGTTCACTGAATCATTTTTATCATCAATTTTCGGTGACGATAACAACAACAGCGTTTCGATATTA
Protein: 518 (aa)
MSTSRLNSVQQFYKDKTIFITGASGLMGKVLLEKLLYSCSELKEVIILMRPKRGKSEVDRVAAFSKLPMFQRILSEKPSVMNKIVPVFGDITQPFLGLSDQHLEKVLESHLVFHAAASLRLEFTLKPNVILNLVGTKNVIDVTKMMPNLRLMVHFSTGFCCPDQEILDERIVEWEDDPMDLIRCSEWMSESAMAKMQKHVLKEHPNTYTYTKRLAEILCRNEFEKGLRICIARPSIIIPALAEPVVGWIDSLNGPAGLMLGAAKGVIRSMLVDGDSETEAIPVDTAVNGIILIAKIVATRESSKEIEVFNVTASEKKKRKLGYVLEAAKKVNFEIPAQIGLWYPDGQITTNKVRHKINVALFHWLPAYFIDFLMLCFRQKRFMVRIQNRISQGLEVLQFFTMRNWMFRSDKFKAINKELSPEEYKMFFIDTESVPDSFEDEFIRNCFLGGRLYVLKEPIETIPKARIQMKIAYIVDRFCKLLIIYFMIKCLLHLLTPFTESFLSSIFGDDNNNSVSIL
| Type | Start | End | Length |
| CDS |
4368 |
4434 |
67 |
| CDS |
4514 |
4650 |
137 |
| CDS |
4781 |
5721 |
941 |
| CDS |
5787 |
5918 |
132 |
| CDS |
6133 |
6267 |
135 |
| CDS |
6557 |
6698 |
142 |
| intron |
4435 |
4513 |
79 |
| intron |
4651 |
4780 |
130 |
| intron |
5722 |
5786 |
65 |
| intron |
5919 |
6132 |
214 |
| intron |
6268 |
6556 |
289 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_313370 |
AGAP003611-PA [Anopheles gambiae str. PEST] gb|EAA08761.5| AGAP003611-PA [Anopheles gambiae str. PEST] |
1e-144 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
1e-06 |
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
1.3e-05 |
| Pfam |
PF03015.14 |
Male sterility protein |
9.9e-23 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
4.1e-06 |
| Pfam |
PF07993.7 |
Male sterility protein |
6.4e-56 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00870 |
| Pn.10426 |
| Pn.00872 |
| Pn.09751 |
| Pn.09750 |
| Pn.09752 |
| Pn.00505 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA000659-TA |
| D. melanogaster |
FBgn0043792 |
| H. melpomene |
HMEL012267-PA |
| H. melpomene |
HMEL009811-PA |
| A. mellifera |
GB18895-PA |
| P. vanderplanki |
Pv.01653 |
| P. vanderplanki |
Pv.01652 |
| P. vanderplanki |
Pv.08846 |
| S. invicta |
SI2.2.0_08200 |
| B. mori |
BGIBMGA006569-TA |
| A. aegypti |
AAEL014302 |
| A. gambiae |
AGAP003611 |
| P. vanderplanki |
Pv.14417 |
| P. vanderplanki |
Pv.00546 |
| P. vanderplanki |
Pv.07337 |
| D. plexippus |
DPOGS208129PA |
| P. vanderplanki |
Pv.03987 |
| P. vanderplanki |
Pv.07338 |
| D. plexippus |
DPOGS200094PA |
| T. castaneum |
TC000107 |
| P. humanus |
PHUM561380-PA |