MidgeBase gene description page [Pn.04339]
Outline
| Gene ID | Pn.04339 |
| Type | Protein coding gene |
| Scaffold | PnScaf3561 |
| Start | 27409 |
| End | 28448 |
| Direction | - |
Sequence
Transcript: 819 (bp)
ATGGAGCCGTGGACAAAAAACTTTGCTGGTCTCACTGTAGGCGGTGCCGGAGCTCTCCTCTATGCTCTTGAATCGTCCGTTAGTGCATCGAGTGATGCAGTTCACTCTCCAAAACAAAACTGGAGCCATAACGGATTGATCTCTTCGCTAGATCATGCAAGTATTCGTCGTGGTTATGAGGTCTACAAGCAAGTTTGTGCAGCCTGCCATTCAATGCAATACATTGCCTACCGTAATCTTATCGGTGTGTCTCATACTGAGGCAGAAGCAAAGGCCGAAGCTGAGGAGGCTCAAGTCAAGGACGGCCCCAATGAGCAAGGCGAATACTTCATGAGACCCGGAAAGCTTTCCGACTACTTCCCGAGTCCATATCCAAACGAAGAAGCCGCACGTGCAGCAAATAATGGAGCTTATCCTCCGGATCTTAGCTGGATCGTTTCGGCTCGCAAGGGAGGCGAGGACTACATCTTTGCATTGCTGACCGGCTATTGCGATCCACCGGCAGGCGTCACACTAAGAGATGGACAATACTACAATCCATACTTCTCAGGTGGTGCTATTGGTATGGCACAGGCTCTGTACAACGAGGCGATGGAATATAGCGACGGCACTCCAGCCACTGCCAGCCAGTTGGCCAAAGATGTCTCAGTGTTTTTGAAATGGGCATCAGAGCCAGAGCATGATACACGCAAGCGCATGTTGATTAAAGCCGTTGGTATCTTTTCGCTTCTTATTGGACTCTCCTACTACATCAAACGTCTAAAGTGGTCGTCACTCAAGTCGAGAAAGATTTCTTTCTATCCAAAAAATAAGCCAGAG
Protein: 273 (aa)
MEPWTKNFAGLTVGGAGALLYALESSVSASSDAVHSPKQNWSHNGLISSLDHASIRRGYEVYKQVCAACHSMQYIAYRNLIGVSHTEAEAKAEAEEAQVKDGPNEQGEYFMRPGKLSDYFPSPYPNEEAARAANNGAYPPDLSWIVSARKGGEDYIFALLTGYCDPPAGVTLRDGQYYNPYFSGGAIGMAQALYNEAMEYSDGTPATASQLAKDVSVFLKWASEPEHDTRKRMLIKAVGIFSLLIGLSYYIKRLKWSSLKSRKISFYPKNKPE
| Type | Start | End | Length |
| CDS |
27412 |
27680 |
269 |
| CDS |
27747 |
28135 |
389 |
| CDS |
28198 |
28336 |
139 |
| CDS |
28427 |
28448 |
22 |
| intron |
27681 |
27746 |
66 |
| intron |
28136 |
28197 |
62 |
| intron |
28337 |
28426 |
90 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002008153 |
GI13337 [Drosophila mojavensis] gb|EDW18629.1| GI13337 [Drosophila mojavensis] |
1e-117 |
| InterPro |
IPR002326 |
Cytochrome c1 |
|
| InterPro |
IPR021157 |
Cytochrome c1, transmembrane anchor, C-terminal |
|
| InterPro |
IPR009056 |
Cytochrome c domain |
|
| Gene Ontology(MF) |
GO:0009055 |
electron carrier activity |
|
| Gene Ontology(MF) |
GO:0020037 |
heme binding |
|
| Gene Ontology(MF) |
GO:0005506 |
iron ion binding |
|
| Pfam |
PF02167.10 |
Cytochrome C1 family |
2.5e-83 |
| Pfam |
PF00034.16 |
Cytochrome c |
0.00078 |
| Pfam |
PF13442.1 |
Cytochrome C oxidase, cbb3-type, subunit III |
0.00037 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP006936 |
| P. vanderplanki |
Pv.09962 |
| B. mori |
BGIBMGA011618-TA |
| S. invicta |
SI2.2.0_00286 |
| A. aegypti |
AAEL011871 |
| C. quinquefasciatus |
CPIJ014410 |
| H. sapiens |
ENSP00000317159 |
| D. plexippus |
DPOGS212973PA |
| P. humanus |
PHUM281660-PA |
| D. melanogaster |
FBgn0035600 |
| H. melpomene |
HMEL011312-PA |
| A. mellifera |
GB12510-PA |
| T. castaneum |
TC010331 |
| C. quinquefasciatus |
CPIJ007566 |
| M. musculus |
ENSMUSG00000022551 |