MidgeBase gene description page [Pn.04322]
Outline
| Gene ID | Pn.04322 |
| Type | Protein coding gene |
| Scaffold | PnScaf3543 |
| Start | 62022 |
| End | 64993 |
| Direction | - |
Sequence
Transcript: 486 (bp)
ATGCGAACCATCGTTATGCTGGATGAGCAAGGAGAACAATTGGACCGCATTGAGGAGGGAATGGACCAGATCAACGCCGACATGCGTGAAGCTGAAAAGAATTTGAGCGGCATGGAAAAGTGTTGTGGCATCTGTGTTTTGCCGTGCAATAAGAGCGCATCTTTCAAGGAAGATGACGGCACATGGAAGGGCAACGATGATGGAAAAGTTGTAAACAATCAGCCACAACGTGTGTGCGATGATCGTAACGGTCTCGGTCCTCAAGGAGGATACATTGGAAGAATCACAAACGACGCACGCGAGGATGAGATGGAAGAGAATATGGGCCAAGTGAACACAATGATTGGTAACTTAAGAAATATGGCATTGGATATGGGCTCAGAACTTGAGAACCAGAATCGTCAAATTGATAGAATCAATCGCAAGGGTGAATCAAACGAGACGAGGATAGCTGTGGCCAACGAAAGAGCACATGATTTGCTCAAG
Protein: 162 (aa)
MRTIVMLDEQGEQLDRIEEGMDQINADMREAEKNLSGMEKCCGICVLPCNKSASFKEDDGTWKGNDDGKVVNNQPQRVCDDRNGLGPQGGYIGRITNDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNETRIAVANERAHDLLK
| Type | Start | End | Length |
| CDS |
62025 |
62084 |
60 |
| CDS |
62334 |
62478 |
145 |
| CDS |
62549 |
62677 |
129 |
| CDS |
62745 |
62862 |
118 |
| CDS |
64960 |
64993 |
34 |
| intron |
62085 |
62333 |
249 |
| intron |
62479 |
62548 |
70 |
| intron |
62678 |
62744 |
67 |
| intron |
62863 |
64959 |
2097 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_321742 |
AGAP001394-PA [Anopheles gambiae str. PEST] gb|EAA01106.5| AGAP001394-PA [Anopheles gambiae str. PEST] |
4e-86 |
| InterPro |
IPR000928 |
SNAP-25 |
|
| InterPro |
IPR000727 |
Target SNARE coiled-coil domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF05739.14 |
SNARE domain |
2.5e-22 |
| Pfam |
PF05377.6 |
Flagella accessory protein C (FlaC) |
0.2 |
| Pfam |
PF00261.15 |
Tropomyosin |
0.16 |
| Pfam |
PF12352.3 |
Snare region anchored in the vesicle membrane C-terminus |
0.072 |
| Pfam |
PF00835.14 |
SNAP-25 family |
2.7e-19 |
| Pfam |
PF03670.8 |
Uncharacterised protein family (UPF0184) |
1.8 |
| Pfam |
PF10779.4 |
Haemolysin XhlA |
0.89 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM458270-PA |
| H. melpomene |
HMEL016476-PA |
| A. mellifera |
GB16958-PA |
| H. sapiens |
ENSP00000254976 |
| H. sapiens |
ENSP00000307341 |
| C. quinquefasciatus |
CPIJ003323 |
| T. castaneum |
TC010177 |
| H. sapiens |
ENSP00000400720 |
| D. melanogaster |
FBgn0028401 |
| S. invicta |
SI2.2.0_14796 |
| P. vanderplanki |
Pv.05880 |
| B. mori |
BGIBMGA005176-TA |
| M. musculus |
ENSMUSG00000027273 |
| D. melanogaster |
FBgn0011288 |
| A. aegypti |
AAEL004559 |
| A. gambiae |
AGAP001394 |
| N. vitripennis |
NV15197-PA |
| D. plexippus |
DPOGS211301PA |