MidgeBase gene description page [Pn.04271]
Outline
| Gene ID | Pn.04271 |
| Type | Protein coding gene |
| Scaffold | PnScaf3491 |
| Start | 28434 |
| End | 34509 |
| Direction | + |
Sequence
Transcript: 4230 (bp)
ATGAAGTTGTGGAACTTTCTGATACTTTTGGTGTCTCTCAATCGGATTAAAAACGCATCGGCGGAGCTTTACGATGATCAACCCAAAATCCTCGTCAACGACGGCAACTTGGTGTTCGAGTCAGCCGACTCGAAGAACATAACGGTGAAGCTGAAGGGCCGCAGTCGCTTTTTAGTCAATGACCTCGACGTGCTCACGATGCTCTCAAATGTCTCTGGCACTGCTTCTAGTGGCAATCCAGGGCAACTCCGTCCCGGCCTTGTTGCAAGCATTCTTCAGCAGATCACAACGCTCCGCGACACCGTCCACCGCCAGAGCCAGCGAATCGACGAGCTCGAGCTCGGCGCAAGCAATGGCAACGCAAACAGCGGAAACAACGGCACAAACACGACGCTCAGCGATCGACAGCGAATCAACAGAATCGGCCGCCGGGTGACTGCTCTCGAGCAGCGCCTTGCCAATCTTACCGAACGACTCACGAAGGACCACTGCAAGAGCTATCCGTGCCAGAACGGCGGCACCTGCTTCAATCTCTTCGACACGTACCGCTGTGAGTGCCCCGAAAATTACGAGGGCCCTCAGTGCACGCTCGACGTCAACGAGTGCGCCCGCTATGTGGGCACCGACCTCGGATGCCAGAACGGAGCGACTTGTGTGAACACCTTCGGCGCTTACGAGTGCACATGTACCGAGGGATGGCACGGCAAGAACTGCAACCGAAGGAAGGTCGACTGTCTCTCGGTGCCGCAGTCGGAGATTTGCGGGCAAGGCATTTGTGTTACCGACAACAGCAAACGCGGCTATTCGTGTATATGCAATCAAGGATGGCGATGGGACAACGGCACTCAGGCGTGCACACAAGACGTCAACGAGTGCGAGGAAATGCGGCCACACTGTTCGGTCGATCCCAAAGTTGTGTGCATCAATACGCCCGGCTCGTTTGTGTGTGGTCCGTGCCCGAGCGGTTATCGAGGAAATGGCTTCTATTGTGAGGACGTCGACGAGTGTGAAGTGAATAATGGCGGCTGCAGTACATCGCCCAGAGTCGAGTGCATCAATACGCGAGGCTCCCACCGATGCGGTCAATGTCCGCTCGGCTACGAGGGCGACGGCAGAATTTGCATAGCACGACAGCCGAATGCACTGAATCAGTGCGACGACAGCAGCATTTGTAATTCTAATGCCGTTTGCTATCAATATCCAAACTCGCCGCCACAGTGCACATGCAAGTACGGATTCACGGGCAACGGCTTCGGCGACAGCGGCTGCATTCCCATCGCTGCTGATCCATGCGTCGCCGTTCGCTGTCGCAACGGAGGCACCTGCGTGCGAAACGGAACGACAGCCTACTGCACTTGCCCGCCGGGCACGAATCCACCTCTGTGCGACCGAACACTCAATAGCTGCGATCCGAATCCTTGCAGAAACGGCGGCAATTGCACGAACACCTTCCGCTTGAGTTTTCGCTGTACGTGCCCGCGCGGCTTCACGGGCCTTCGATGCGAAAATCAGCTGGCCACTTGCGGAGGCGTATTGTCGGACGAGCGAGGCACGCTGCGCTATCCAACAGACCCGGCTGCGGCCTCCTATCAGCACAACTCGCGCTGTGCCTGGCTCATCCGAACGAACATCACAAAAGTATTGAATATCACGTTTACGTCATTCGACGTCGAGTTCTCGAACGAGTGCCGATACGACTGGCTCCAAATACATGACGGACGGACGGCAGCGTCGCACATCATAGGCAGATTTTGCGGGTCGCAGCTGCCGAAAGGCGGCAACATCATTTCCACGCACAACTCACTCTATTTGTGGTTCCGATCGGATAACAGCACATCGCACTCTGGCTTTGAGCTCACGTGGGAGACGATAGATCCAGTGTGCGGTGGCGAGCAAAACATTGTGTCGCACGGAACAATCGCATCGCCCGGCTCGCCGGGAAATTATCCCATAAATAGCGAATGCGAGTGGATTCTACTCGCACCGGCCGGCAAGCGTATTCAATTTCTCTTCTACACGCTGATGATTGAGGCGCACACCACGTGCGGTTACGATTACCTCGAAATCCACAGCGGCATCGGAACGTCGTCGCCGAGCTTAGGGAAATTCTGCAACTCGTCGATTCCAGCGCCGCTTCTAACGCCTGGCAACGTTGCGACGATTCATTTTCACACCGACGGTGACTCGACCGATGCGGGCTTTCAAATCGCCTACTCGGTCGTCGAGGGAATTCCCGGCTGCGGTGGCGTTTATACGGCTCCGAAAGGCGATATCTCGTCGCCGACAAACATCGTCGATGGAACCTACAAGCACAATTTGATGTGCGACTATGTGATCCGGATGCCGAGCAATTCGAGAGTGCGCCTTGAGTTTAAAAAATTCGGACTGGAGGAGAGCTCGAGCTGCAAGTTTGACTCCCTCGAGATCTTCGAAGGCGACGAGGGCAACGAGGAGGGACTGATAGGTCGCTACTGCGGCACTACAACACCTCCAACCATAACATCGAGCACCAACGTTGTCACGCTGAAATTCACGACAGATTGGTCGACGAGCGACATTGGCTTCGAGCTGCAGTACCAGCTAATCTGCGGCGGAATATTTACAGCGGATGAGGGCGTATTTTCGAGTCCGAACTATCCGAACAACTACGACGCTGACCTTCTCTGCGAGTACGACATTATTGCGCCGCAAGGCAAGGTGATTTTCCTGAACATCCTCGACTTTGAGATCGAGCAGCACTCGTCGTGCGAGTTCGATTATCTGCAAATTTTCGACAGCTCATCGGCCGAAAACTCGACGAGTCTGGGCCGATATTGCGGCGACATCAGGCCCGGCACCTTTACGTCCAGCTTCAATCACATTCACCTGCAGTTTGCTTCAGATGGGTCGGTGTTTGGCACCGGTTTTCAGGCCAACTACACGTTCGTGGATGTCAGGTGTGGCGGGTTGATTAAAGACGCCAAAGAGCTCGTGAAGGCGCCCCTCGACCAGAACAACAACGGCGTCTACGAGTCGAACGCCCTCTGCAAGTGGCTGGTGGTCGCACCCAAGGGCCACGTCATTCAAATGAACATCCTGAACTTCGAACTGGAGCTCGACAACTCGTGCAAGTACGACTACTTGACCATCTACAACAATGGCTCGGGCAATGGCGGACAGGTGGGGCCGTTTTGCGGCACAAACATCCCGAAAGTCATCACGACCGTCGACAACATTGCGACCATTGTTTTCGTTTCCGACTCTTCCACATCAAAGGACGGCTTCACAATCAGCTTCAATTTCATCGATGGCACTAAACTGTGCGGCGGTAACTTCCACTCGCTGCACGGAAAGATAAAAAGTCCGGGCACCGGAATGTACTTGCCGAACAAGGAGTGTGAGTGGACCATCACCGTGCCGCACGGACAGCAGATTGAGGTGAACTTCAAGTTCTTCGACATCGAGAATCACAGCGCATGCCGCTTCGATGGGCTCGAAATCCGCAACGGCGGTAACAGTCTGGCGCCATTGCTGAGCAAGATTTGCGGCAGCACCGTGCCGCCGCCGTTCCGATCGATGGGCAATCAGCTGTACTTCCGGTTCTACTCGGACTCGTCGCGCAGCGGCACGGGCTTCGAGCTCGAATGGGACGGAACGAGTGCGGGCTGCGGCGGCATTCTAACCACAGCCAAGGGCGCGCTCATCTCGCCCAACTACCCGCTCAATTACCCGCGCAATTCGCAGTGCGAGTGGCGCATCACCGTCAACGAAGGCTCCTCCATCCACATCGTCTTCTCGGACCTCGACCTGGAGGCTAACTCCGAATGCCGCTACGACTACCTCGAGATCTTCGACGGGCCCGACCCGAGCGCGCGCAGCTTCGGCAAGTTCTGCGAGGAGCACCCGATGCACATCGAGACGAGCAGCAACCACGCGATGCTGCGCATGAACACCGACGAGTCGCACTCGGGCAGGGGCTTTCACGTGAAGTACTCGACGAATTGCAACCGCACGATCGAGGCGGACAGTGGCGTCATCGAGTCGCCGAACTTCCCCGAAGATTACCCGAGCAACCTCGACTGCGCGTGGACGATCAAGGTGTCGCGCGGCAACAAGGTGAACCTGCAGTTCTCGCACTTCTCCATCGAGAACGACAACCTCTACCACAACGAGACGGGCGGACACATCTGCAAGCGGCCGTCGGAACCGGCTTTCGTCTCGAGTGGTACAACGAGGGCTGCGGCGGAAAGC
Protein: 1410 (aa)
MKLWNFLILLVSLNRIKNASAELYDDQPKILVNDGNLVFESADSKNITVKLKGRSRFLVNDLDVLTMLSNVSGTASSGNPGQLRPGLVASILQQITTLRDTVHRQSQRIDELELGASNGNANSGNNGTNTTLSDRQRINRIGRRVTALEQRLANLTERLTKDHCKSYPCQNGGTCFNLFDTYRCECPENYEGPQCTLDVNECARYVGTDLGCQNGATCVNTFGAYECTCTEGWHGKNCNRRKVDCLSVPQSEICGQGICVTDNSKRGYSCICNQGWRWDNGTQACTQDVNECEEMRPHCSVDPKVVCINTPGSFVCGPCPSGYRGNGFYCEDVDECEVNNGGCSTSPRVECINTRGSHRCGQCPLGYEGDGRICIARQPNALNQCDDSSICNSNAVCYQYPNSPPQCTCKYGFTGNGFGDSGCIPIAADPCVAVRCRNGGTCVRNGTTAYCTCPPGTNPPLCDRTLNSCDPNPCRNGGNCTNTFRLSFRCTCPRGFTGLRCENQLATCGGVLSDERGTLRYPTDPAAASYQHNSRCAWLIRTNITKVLNITFTSFDVEFSNECRYDWLQIHDGRTAASHIIGRFCGSQLPKGGNIISTHNSLYLWFRSDNSTSHSGFELTWETIDPVCGGEQNIVSHGTIASPGSPGNYPINSECEWILLAPAGKRIQFLFYTLMIEAHTTCGYDYLEIHSGIGTSSPSLGKFCNSSIPAPLLTPGNVATIHFHTDGDSTDAGFQIAYSVVEGIPGCGGVYTAPKGDISSPTNIVDGTYKHNLMCDYVIRMPSNSRVRLEFKKFGLEESSSCKFDSLEIFEGDEGNEEGLIGRYCGTTTPPTITSSTNVVTLKFTTDWSTSDIGFELQYQLICGGIFTADEGVFSSPNYPNNYDADLLCEYDIIAPQGKVIFLNILDFEIEQHSSCEFDYLQIFDSSSAENSTSLGRYCGDIRPGTFTSSFNHIHLQFASDGSVFGTGFQANYTFVDVRCGGLIKDAKELVKAPLDQNNNGVYESNALCKWLVVAPKGHVIQMNILNFELELDNSCKYDYLTIYNNGSGNGGQVGPFCGTNIPKVITTVDNIATIVFVSDSSTSKDGFTISFNFIDGTKLCGGNFHSLHGKIKSPGTGMYLPNKECEWTITVPHGQQIEVNFKFFDIENHSACRFDGLEIRNGGNSLAPLLSKICGSTVPPPFRSMGNQLYFRFYSDSSRSGTGFELEWDGTSAGCGGILTTAKGALISPNYPLNYPRNSQCEWRITVNEGSSIHIVFSDLDLEANSECRYDYLEIFDGPDPSARSFGKFCEEHPMHIETSSNHAMLRMNTDESHSGRGFHVKYSTNCNRTIEADSGVIESPNFPEDYPSNLDCAWTIKVSRGNKVNLQFSHFSIENDNLYHNETGGHICKRPSEPAFVSSGTTRAAAES
| Type | Start | End | Length |
| CDS |
28434 |
28513 |
80 |
| CDS |
28600 |
29196 |
597 |
| CDS |
29282 |
29554 |
273 |
| CDS |
29636 |
29761 |
126 |
| CDS |
30182 |
30812 |
631 |
| CDS |
30902 |
31073 |
172 |
| CDS |
31411 |
31955 |
545 |
| CDS |
32153 |
32312 |
160 |
| CDS |
32382 |
33095 |
714 |
| CDS |
33361 |
33559 |
199 |
| CDS |
33632 |
34306 |
675 |
| CDS |
34449 |
34506 |
58 |
| intron |
28514 |
28599 |
86 |
| intron |
29197 |
29281 |
85 |
| intron |
29555 |
29635 |
81 |
| intron |
29762 |
30181 |
420 |
| intron |
30813 |
30901 |
89 |
| intron |
31074 |
31410 |
337 |
| intron |
31956 |
32152 |
197 |
| intron |
32313 |
32381 |
69 |
| intron |
33096 |
33360 |
265 |
| intron |
33560 |
33631 |
72 |
| intron |
34307 |
34448 |
142 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843996 |
cubilin [Culex quinquefasciatus] gb|EDS35495.1| cubilin [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR000859 |
CUB |
|
| InterPro |
IPR018097 |
EGF-like calcium-binding, conserved site |
|
| InterPro |
IPR000152 |
EGF-type aspartate/asparagine hydroxylation site |
|
| InterPro |
IPR006209 |
EGF-like domain |
|
| InterPro |
IPR006210 |
Epidermal growth factor-like |
|
| InterPro |
IPR001881 |
EGF-like calcium-binding |
|
| InterPro |
IPR000742 |
Epidermal growth factor-like domain |
|
| InterPro |
IPR013032 |
EGF-like, conserved site |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF12662.2 |
Complement Clr-like EGF-like |
0.002 |
| Pfam |
PF07974.8 |
EGF-like domain |
0.0017 |
| Pfam |
PF12947.2 |
EGF domain |
2.6e-09 |
| Pfam |
PF12661.2 |
Human growth factor-like EGF |
0.0003 |
| Pfam |
PF07645.10 |
Calcium-binding EGF domain |
9.9e-18 |
| Pfam |
PF02408.15 |
CUB-like domain |
6.8e-15 |
| Pfam |
PF00008.22 |
EGF-like domain |
1.4e-22 |
| Pfam |
PF00431.15 |
CUB domain |
6.5e-210 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_03406 |
| P. vanderplanki |
Pv.14800 |
| N. vitripennis |
NV13464-PA |
| T. castaneum |
TC007013 |
| A. mellifera |
GB17517-PA |
| D. plexippus |
DPOGS207300PA |
| H. sapiens |
ENSP00000367064 |
| B. mori |
BGIBMGA014545-TA |
| A. aegypti |
AAEL010965 |
| D. melanogaster |
FBgn0052702 |
| P. humanus |
PHUM104920-PA |
| P. vanderplanki |
Pv.12269 |
| C. quinquefasciatus |
CPIJ002327 |
| A. gambiae |
AGAP005526 |
| D. melanogaster |
FBgn0259140 |
| A. aegypti |
AAEL014312 |
| M. musculus |
ENSMUSG00000026726 |