MidgeBase gene description page [Pn.04242]
Outline
| Gene ID | Pn.04242 |
| Type | Protein coding gene |
| Scaffold | PnScaf3476 |
| Start | 6670 |
| End | 7618 |
| Direction | - |
Sequence
Transcript: 876 (bp)
ATGGCTTATAATCCACTTAGTGAGGCGGAAAAGGTCTTCATATTGCATGGAGTACAAGACGATCTCAGAAATGATGGAAGATCGAGAAGAGACTTTCGCCCGATGGCATTGCAGACAAGCGTGATAGCGAGTGCCAGCGGCAGTGCAAGATTCTGCATAGCAAACTCAGACATCTTGGTAGGAATAAAGCCAGAGATCGACGTTCCTCTGCCAAATAAGCCGGAAGAGGGAAAAATTGAATTTTCGGTCGATTGCTCGGCAAACGCACTGCTCGACTTCGAAGGTCGAGGGGGCGAAGACCTGGCAATGGAAATAGCCAATTGCCTACGAATCACCTACTCCTCTCCTTTCGCATTCGACTTGAAATCATTGTGCATCCTGCCAAAGCACCAATGCTGGAAGCTCTACGTCGACATTCTCATTCTGCAATGTGCCGGCAACCTGTATGACGCCATTTCATTTGCGGTCAAGAGTGCGCTCTACAATCTAAGGATTCCGCGCGTAAACAGTGCTCTTCTCGACGGCGGAAGTGTCGATCTGGTGCTCTCAGACGATCCTTCAGACTGCGACCGACTGAATGTGGAGTCCGTGCCGATATTGCTCACCATCTGCAAAATCGGCGAACACTGCGTCATTGACCCGTCGATTGATGAGGAAATTTGCAGCACGTCAAACGTCGTGATAGGAGTTTCGGGCAACAAAATAACTTCGCTGAAGACAATTAGCGGGGGATCTTTTCATTCCGACACAATCGAAAACTGCCTCGACTTGGCCTTGTCGACTGCGAATGTCCTCAACGAAGCTCTTTTGAAAATGCTGAGACAGGAGGAGAGTCTCGCCGAAAAGAAGAAGAATATTCAGTGCTCTTTCCTCAAT
Protein: 292 (aa)
MAYNPLSEAEKVFILHGVQDDLRNDGRSRRDFRPMALQTSVIASASGSARFCIANSDILVGIKPEIDVPLPNKPEEGKIEFSVDCSANALLDFEGRGGEDLAMEIANCLRITYSSPFAFDLKSLCILPKHQCWKLYVDILILQCAGNLYDAISFAVKSALYNLRIPRVNSALLDGGSVDLVLSDDPSDCDRLNVESVPILLTICKIGEHCVIDPSIDEEICSTSNVVIGVSGNKITSLKTISGGSFHSDTIENCLDLALSTANVLNEALLKMLRQEESLAEKKKNIQCSFLN
| Type | Start | End | Length |
| CDS |
6673 |
7434 |
762 |
| CDS |
7505 |
7618 |
114 |
| intron |
7435 |
7504 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651510 |
exosome complex exonuclease rrp42 (ribosomal RNA processing protein 42 [Aedes aegypti] gb|EAT42627.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein 42 [Aedes aegypti] |
2e-97 |
| InterPro |
IPR015847 |
Exoribonuclease, phosphorolytic domain 2 |
|
| InterPro |
IPR001247 |
Exoribonuclease, phosphorolytic domain 1 |
|
| InterPro |
IPR020568 |
Ribosomal protein S5 domain 2-type fold |
|
| Pfam |
PF03725.10 |
3' exoribonuclease family, domain 2 |
3.2e-12 |
| Pfam |
PF01138.16 |
3' exoribonuclease family, domain 1 |
1.1e-19 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_07329 |
| H. sapiens |
ENSP00000265564 |
| D. plexippus |
DPOGS201483PA |
| P. vanderplanki |
Pv.16884 |
| P. humanus |
PHUM530150-PA |
| A. gambiae |
AGAP010483 |
| T. castaneum |
TC002710 |
| A. aegypti |
AAEL005851 |
| H. melpomene |
HMEL015936-PA |
| A. mellifera |
GB10475-PA |
| M. musculus |
ENSMUSG00000025785 |
| N. vitripennis |
NV16113-PA |
| B. mori |
BGIBMGA002671-TA |
| D. melanogaster |
FBgn0034065 |