MidgeBase gene description page [Pn.04228]
Outline
| Gene ID | Pn.04228 |
| Type | Protein coding gene |
| Scaffold | PnScaf3462 |
| Start | 3069 |
| End | 4540 |
| Direction | - |
Sequence
Transcript: 1341 (bp)
ATGCAACAAATCACCAAAAAACCATACGTTAAGCCCGTTGCCATAATTAAAAGCTTCTTTGGACGAAAGTATCATGAGTCGAAAATCGGCAAAGACGTATGTCTTGTCAAACGAAGCTTATTTTTAGATGACTGTTTCGGCAATGGACTTGCTCCAGTCATAAAATCAAATTCAACAAACAGCGACAACGACAAGGAAAATTACAATAATGACGGCGAAATTATTTACTGCACACTTACGCGCGAAAAAAACTATTATGTGATTAGCACAACGTCAATAGAACTAGAAGTCAATGGGCAAGCGCTGACGAAAGGCTACAGGAGAATTCTCAAAACAAACGATAAGATTAGTGTAGTTGGGGAGCCAAACCTAAATTTCTACTTCACTTATTTCATGAATCAAGTGATTGCTCAGAATTTTCACGCGGACGTGCTAATGGACTATCACATAGAATGTGTGATTGGCAAGGGAGCTTGCGGCGAATCATTCCTCGTTCGTGACATTCGAACTTTGAGAAAGCTTGCCGTAAAGCGACTCACTAAAACCGCTTCGATCGACAACCCCAAGGACTATCACTACGAGGCGCGCATGCACCAGCTGCTCGATCACCCGAACATAGTGAAGCTAATGAAAGTTCACGATACCAAGGCCTACACATATATTTTCACGGAATTTCTCAATCGAAACGATATGCTGGCAGTTATCAAATCGCGCCCCAACAACAAGCTCAGCGAAGACGAATGCAAAGAGTTTTTGCATCAAGTCGTTCAGGGTCTGAAGTACCTGCACGGACGAAATATTTGCCATCGTGACATCAAGTGCGATAACATCTTTGTCAACTTTGAGAACAATCGCTATGTGTGCAAGATCGGCGATTTTGGACTCTCTGCATTTAACGAAAACCTAAGGGATTCTTGCGGAACAATTTACTATGCGCCACCAGAGTTGTTTGTTAAAAAAAACGAGCCTTACAACGGACTCGCGTGCGACATTTGGAGCCTCGGGGTCTCCATGTATTGCATGCTCACCGGCCGATTTCCCTTTCACGATGAGGACAAGACAAAATTGGCGAAGATCATTGCTGCGAGCCGTATCGATTTCGGTACCACAAATATGTCCTACTACGCAAAGCACCTCATTTGCTGCATGATCAACAGAGATCCCACGTTTCGCTATCGAATTAATGAGGTTGAAAGGCATCCCTGGTTCACCGACTCGCAACCTGTTGTTTTCCACTCGGTGGCTTCGTCGACTCCAGTCTCAAGGCAATTAAAACGCAAGAAACCGACTGAAGTGTGTACTAATTATCAACCTGTGTACAAAAAGAGGGTTAAATTTGCT
Protein: 447 (aa)
MQQITKKPYVKPVAIIKSFFGRKYHESKIGKDVCLVKRSLFLDDCFGNGLAPVIKSNSTNSDNDKENYNNDGEIIYCTLTREKNYYVISTTSIELEVNGQALTKGYRRILKTNDKISVVGEPNLNFYFTYFMNQVIAQNFHADVLMDYHIECVIGKGACGESFLVRDIRTLRKLAVKRLTKTASIDNPKDYHYEARMHQLLDHPNIVKLMKVHDTKAYTYIFTEFLNRNDMLAVIKSRPNNKLSEDECKEFLHQVVQGLKYLHGRNICHRDIKCDNIFVNFENNRYVCKIGDFGLSAFNENLRDSCGTIYYAPPELFVKKNEPYNGLACDIWSLGVSMYCMLTGRFPFHDEDKTKLAKIIAASRIDFGTTNMSYYAKHLICCMINRDPTFRYRINEVERHPWFTDSQPVVFHSVASSTPVSRQLKRKKPTEVCTNYQPVYKKRVKFA
| Type | Start | End | Length |
| CDS |
3072 |
3299 |
228 |
| CDS |
3361 |
4397 |
1037 |
| CDS |
4465 |
4540 |
76 |
| intron |
3300 |
3360 |
61 |
| intron |
4398 |
4464 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002974713 |
hypothetical protein SELMODRAFT_414787 [Selaginella moellendorffii] gb|EFJ24233.1| hypothetical protein SELMODRAFT_414787 [Selaginella moellendorffii] |
2e-37 |
| InterPro |
IPR000719 |
Protein kinase, catalytic domain |
|
| InterPro |
IPR002290 |
Serine/threonine- / dual-specificity protein kinase, catalytic domain |
|
| InterPro |
IPR020635 |
Tyrosine-protein kinase, catalytic domain |
|
| InterPro |
IPR011009 |
Protein kinase-like domain |
|
| InterPro |
IPR008271 |
Serine/threonine-protein kinase, active site |
|
| Gene Ontology(BP) |
GO:0006468 |
protein phosphorylation |
|
| Gene Ontology(MF) |
GO:0004713 |
protein tyrosine kinase activity |
|
| Gene Ontology(MF) |
GO:0004674 |
protein serine/threonine kinase activity |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004672 |
protein kinase activity |
|
| Gene Ontology(MF) |
GO:0016772 |
transferase activity, transferring phosphorus-containing groups |
|
| Pfam |
PF00069.20 |
Protein kinase domain |
4e-59 |
| Pfam |
PF06293.9 |
Lipopolysaccharide kinase (Kdo/WaaP) family |
0.00062 |
| Pfam |
PF07714.12 |
Protein tyrosine kinase |
2.1e-32 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes