MidgeBase gene description page [Pn.04200]
Outline
| Gene ID | Pn.04200 |
| Type | Protein coding gene |
| Scaffold | PnScaf3455 |
| Start | 62254 |
| End | 63973 |
| Direction | + |
Sequence
Transcript: 1383 (bp)
ATGACGGAGAATCAAGTCGACTCAACAGCTCCTCGCGAAAATGGCGAAAATACGAATAATAGTAAGAAGAAGAATGTAGTGGAAGTTTCTGCGGGCCACGGGTTAGTGAGTGACGACCATCCACCGATATCCTATCTCGAGGCGCTTGCGAACTTATTTAAGGCAAATGTTGGAACTGGTTGCTTCGGCATGGCGGACGCCATAAAGAATGCAGGCATCATCCTTGGTCCGATAGCTACCATCGTCATCGCCATCATTTGCGTCGAATGCATGCACATGCTCGTGACGGCTGCGGAATTTATAATGCGACGCAACCAGCTGAGTTCGCGACCAGATTTCGCGCAAGTCATCGAACTTTGCTTCTCCACCAGCCGACACGAGAACCTGAGAAAGTATTCCAAGATCGTGAAGAAAATCTGCAACATCTCCATTTGCATAACTCAGCTCGGCTTCTGCTGCGTTTACATCGTTTTCGTAGCGGACAGCTTCAAGACCATACTCGATTTCTACACAATCGAACACGGTTATGTGATTGACTTAAAGTTACTTATGGCGCTTGCACTTATTCCGATTTTACTTACCGCCTTGGTAAGGCAACTGAAAACTATCGCAATATTTTCGATAATTGCAAACTTTTGCATGATCACTGGCGCCATAATAACAATGGGATATTGCATGATCGATTTGCCGCCAATTCAGAAGCATGCGTATGTCAAATTTGACACTCTTCCACTCTACTTCGGAACCGTTTTATTCGCTTTCGAGGGAATTGCGGTTGTTCTGCCTCTTCAGAACTCAATGAAGCGACCGGAAAATTTCTCTAAAGTACTCGGTGTTTTGAACGTGGGTATGGTACTCGTCAGCCTCATTTACATTCTTCTTGGGACCATGGGCTACTGGAAATACGGCGAGAAGACGAACGCTTCTCTCACACTCAACCTCCCGACCGATCAAATATTGGCGCAAATAATCATTTTGATGGTCGCGTTGGGCGTTCTGCTCGGATACGCAATTCAATTTTTCGTCGCGATTCAAATCATGTTTCCATCGATTACGAACACTTGGAAGACGGCGGCAAAATATCCAATACGGAGCGAGTTGATTTTTAGAGCTTTTATGGTGCTAGTGACCTTCACAGTGGCGCAGCTTGTGCCCAATTTGAGCTTGCTTCTCGCACTCATCGGCTCGGTCTGTTGCGTAGTGTTGGTGTTTGTCTACCCGGTGATTGCAGAAATGATTACGAAAAACGACCAAGAGGGTGGAATTTCGGTGTTCGTGTGGGTCAAAAACATCATTATCATGACACTTGCTGCGTGCGGTTTCGTGCTGGGCGGCGGACTTTCGATGATCAACATCTACGAGAGCTTCTCTCACACACACATC
Protein: 461 (aa)
MTENQVDSTAPRENGENTNNSKKKNVVEVSAGHGLVSDDHPPISYLEALANLFKANVGTGCFGMADAIKNAGIILGPIATIVIAIICVECMHMLVTAAEFIMRRNQLSSRPDFAQVIELCFSTSRHENLRKYSKIVKKICNISICITQLGFCCVYIVFVADSFKTILDFYTIEHGYVIDLKLLMALALIPILLTALVRQLKTIAIFSIIANFCMITGAIITMGYCMIDLPPIQKHAYVKFDTLPLYFGTVLFAFEGIAVVLPLQNSMKRPENFSKVLGVLNVGMVLVSLIYILLGTMGYWKYGEKTNASLTLNLPTDQILAQIIILMVALGVLLGYAIQFFVAIQIMFPSITNTWKTAAKYPIRSELIFRAFMVLVTFTVAQLVPNLSLLLALIGSVCCVVLVFVYPVIAEMITKNDQEGGISVFVWVKNIIIMTLAACGFVLGGGLSMINIYESFSHTHI
| Type | Start | End | Length |
| CDS |
62254 |
62425 |
172 |
| CDS |
62526 |
62963 |
438 |
| CDS |
63070 |
63381 |
312 |
| CDS |
63442 |
63475 |
34 |
| CDS |
63544 |
63970 |
427 |
| intron |
62426 |
62525 |
100 |
| intron |
62964 |
63069 |
106 |
| intron |
63382 |
63441 |
60 |
| intron |
63476 |
63543 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_573191 |
CG16700 [Drosophila melanogaster] gb|AAF48694.1| CG16700 [Drosophila melanogaster] gb|AEX93135.1| FI17861p1 [Drosophila melanogaster] |
1e-100 |
| InterPro |
IPR013057 |
Amino acid transporter, transmembrane |
|
| Pfam |
PF01490.13 |
Transmembrane amino acid transporter protein |
2.6e-75 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.17046 |
| P. vanderplanki |
Pv.17045 |