MidgeBase gene description page [Pn.04183]
Outline
| Gene ID | Pn.04183 |
| Type | Protein coding gene |
| Scaffold | PnScaf3442 |
| Start | 41857 |
| End | 42513 |
| Direction | + |
Sequence
Transcript: 597 (bp)
ATGGTCAAGCTATATGCGATCAGTGTATTTTACAAGACATCGACAGAGGCCAAAATATTGAAATCTCACTACGATCTCCAGAGCTTCAGCTTTTTCCAAAGAGGAAGTGTTCAAGAGTTTATTCAGTTCGCGAGCAAAACAATTACTGAAAGAACAAGTCCGAGCACTCGACAATCGGTGAAGCAAGATGTCTACATGTGTCACGTCTATGTGAGATCCGATAATTTGGCGGCAGTCCTCATTGCAGACCATGAATATCCAGGGCGTGTTGCTCACACTCTACTGACGAAGATCATGGACGACTTTGCGGCTAAAGTGTCGAGCGATCAGTGGCCCAACGGCACGGAGCAGTCAATTAGTTTCACTCAGCTTCCAGCCTACATCACAAAGTATCAGGACCCACGCGAAGCCGATCCACTGACGAAAATGCAAAACGACTTGGACGAAACGAAAATCATCCTTCGAAACACAATCGAGCAAGTTTTGATACGAGGCGAGAAGCTGGACGACTTGGTCAGTCAGTCCGAGGAGCTGTCGGCACAGAGTAAAGCCTTCTACAAAACTGCAAAAAAGACAAACTCATGCTGTAACTTTAGT
Protein: 199 (aa)
MVKLYAISVFYKTSTEAKILKSHYDLQSFSFFQRGSVQEFIQFASKTITERTSPSTRQSVKQDVYMCHVYVRSDNLAAVLIADHEYPGRVAHTLLTKIMDDFAAKVSSDQWPNGTEQSISFTQLPAYITKYQDPREADPLTKMQNDLDETKIILRNTIEQVLIRGEKLDDLVSQSEELSAQSKAFYKTAKKTNSCCNFS
| Type | Start | End | Length |
| CDS |
41857 |
42118 |
262 |
| CDS |
42176 |
42510 |
335 |
| intron |
42119 |
42175 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001862533 |
conserved hypothetical protein [Culex quinquefasciatus] ref|XP_001864084.1| conserved hypothetical protein [Culex quinquefasciatus] gb|EDS37171.1| conserved hypothetical protein [Culex quinquefasciatus] gb|EDS39564.1| conserved hypothetical protein [Culex quinquefasciatus] |
3e-90 |
| InterPro |
IPR010908 |
Longin domain |
|
| InterPro |
IPR011012 |
Longin-like domain |
|
| InterPro |
IPR001388 |
Synaptobrevin |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF13774.1 |
Regulated-SNARE-like domain |
2.1e-16 |
| Pfam |
PF00957.16 |
Synaptobrevin |
7.4e-14 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM396760-PA |
| T. castaneum |
TC013212 |
| H. sapiens |
ENSP00000223369 |
| P. vanderplanki |
Pv.02053 |
| M. musculus |
ENSMUSG00000002741 |
| H. sapiens |
ENSP00000420805 |
| N. vitripennis |
NV18198-PA |
| A. gambiae |
AGAP000392 |
| D. melanogaster |
FBgn0260858 |
| C. quinquefasciatus |
CPIJ013654 |
| A. mellifera |
GB12321-PA |
| B. mori |
BGIBMGA008498-TA |
| S. invicta |
SI2.2.0_12495 |
| A. aegypti |
AAEL017562 |
| D. plexippus |
DPOGS206667PA |
| C. quinquefasciatus |
CPIJ011790 |