MidgeBase gene description page [Pn.04110]
Outline
| Gene ID | Pn.04110 |
| Type | Protein coding gene |
| Scaffold | PnScaf3368 |
| Start | 16196 |
| End | 18099 |
| Direction | + |
Sequence
Transcript: 1764 (bp)
ATGCCAACTATTGGAGTGAAACGTGACCTGCTGTTTGAAGCACTCGGGAAAACGTATACTGATGACGAATTCCAGAGTCTTTGCTTTGAGTTTGGCTTAGAGCTCGATGAAGTTACAACCGAGAAGCAAATGCTTACGAAGGAGCAAGGAGATGATGCTGCGGTAGCTCAAAATGCGTCCGAAGATATAATTTACAAAATCGACATCCCGGCTAATCGCTACGACCTTCTTTGCTTGGAGGGATTAACAAATGGCCTTCTGATTTTTCAAAAAAAGCGAGACTCACCAAACTACAAGAAGATTATTCCGAAAAAGATTGAAAAAATGTACGTGACCGAGTCGACGCTACAGATCCGACCGTTCGTGGTTGGTGCAATTTTGCGCAACGTGCAGCTCGATAAAGATCGCTATGCAAATTTTATCGATCTGCAAGACAAGTTACATCAGAACATTTGCCGAAAGCGTACTTTAGTTGCAATAGGTACTCACGATTTGGATACAATTAAAGGTCCTTTCAAATATGATGCAAAAAAGCCCCAAGACATAAGCTTCATTCCGCTCAATCAAACTAAAGAGATGAACGGTGAAGAGTTGATGAACTTTTATTCTACTCATGCTCAACTCAAGGCATACCTTCCAATTATTCGTGACTCGCCCGTTTATCCAGTAATCTATGATTCACAAGGAATCGTTTTGTCTCTGCCGCCTATAATCAATGGAGATCACTCAAAAATATCTGTCGATACAAAAAACATCTTCATTGAGTGCACAGCTACCGATTTGACCAAGGCAAAGATTGTGCTCGATACGATCGTCACTCTTTTCTCTCAATATTGTTTGGAGCCATTCACCATTGAAGCGGTGGAAGTACACAGTGCTGACGGTTCTGTTGCAACCTATCCAGAGCTAAATGTGCGAGACGAAAAGATAAATGTGGACAAGCTTAATACCTACATCGGAATCGATGTGAATGCCGAAGATGTCGCCGATATGCTTAGCAGAATGATGCTGAAATCAACGGTTCTAAATAGCAACGAAGTCGCTATTCAGATTCCGCCTACTCGACACGATGTCATTGACAAAACGGATATCATTGAAGATGTCGCAATTGCGTACGGTTACAATAAAATCAAGAATGTTATTCCCAACATAAACACAATTGGTGGCAAGTTTCCACTGAATAAACTCACTGAACTGCTTCGCGTCGAACTCGCACAATCGGGTTTCACCGAGGGACTCACCTTCACCTTGTGCTCGCGTGACGACGTAGCCAAGAAGATGAATAAGAAGATCGAAGAAATTCCGGCTGTTCACATTTCAAATCCGAAAACGGCCGAATTCCAAATCGCGAGAACAACTCTGCTACCCGGTCTTCTCAAAACCATTTCTGCGAACAAAAAAATGCCGTTACCGTTGAAACTCTTTGAGATATCGGATGTCATCATCAAGGACAGTGAAACGGAAGTAGGAGCACGCAACGAGAGAAGGCTGTGTGCCGTAAATTACAACAAACATGCAGGATTTGAAGTTGTTCACGGTATTTTAGACCGAATTATGCAAGTGCTGGAAGTTCCATGGGACAAAACAAATGGTTACTCTCTGAACGCAATAGACGATCCTTCATATTTTCCCGGGAGATGCGCATCTGTGCTCTACAAAGGAATAGTTATAGGAAAAATTGGAATTTTACACCCAACCGTTCTAGAAGCATTCGAGCTTGTGAACCCTGTATCTGTGGTCGAGTTCACTATTGAGCCTTTCGTC
Protein: 588 (aa)
MPTIGVKRDLLFEALGKTYTDDEFQSLCFEFGLELDEVTTEKQMLTKEQGDDAAVAQNASEDIIYKIDIPANRYDLLCLEGLTNGLLIFQKKRDSPNYKKIIPKKIEKMYVTESTLQIRPFVVGAILRNVQLDKDRYANFIDLQDKLHQNICRKRTLVAIGTHDLDTIKGPFKYDAKKPQDISFIPLNQTKEMNGEELMNFYSTHAQLKAYLPIIRDSPVYPVIYDSQGIVLSLPPIINGDHSKISVDTKNIFIECTATDLTKAKIVLDTIVTLFSQYCLEPFTIEAVEVHSADGSVATYPELNVRDEKINVDKLNTYIGIDVNAEDVADMLSRMMLKSTVLNSNEVAIQIPPTRHDVIDKTDIIEDVAIAYGYNKIKNVIPNINTIGGKFPLNKLTELLRVELAQSGFTEGLTFTLCSRDDVAKKMNKKIEEIPAVHISNPKTAEFQIARTTLLPGLLKTISANKKMPLPLKLFEISDVIIKDSETEVGARNERRLCAVNYNKHAGFEVVHGILDRIMQVLEVPWDKTNGYSLNAIDDPSYFPGRCASVLYKGIVIGKIGILHPTVLEAFELVNPVSVVEFTIEPFV
| Type | Start | End | Length |
| CDS |
16196 |
16253 |
58 |
| CDS |
16330 |
17886 |
1557 |
| CDS |
17948 |
18096 |
149 |
| intron |
16254 |
16329 |
76 |
| intron |
17887 |
17947 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001955682 |
GF18885 [Drosophila ananassae] gb|EDV44243.1| GF18885 [Drosophila ananassae] |
0.0 |
| InterPro |
IPR009061 |
DNA binding domain, putative |
|
| InterPro |
IPR005147 |
tRNA synthetase, B5-domain |
|
| InterPro |
IPR004531 |
Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic |
|
| InterPro |
IPR005146 |
B3/B4 tRNA-binding domain |
|
| Gene Ontology(BP) |
GO:0006432 |
phenylalanyl-tRNA aminoacylation |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0000287 |
magnesium ion binding |
|
| Gene Ontology(MF) |
GO:0004826 |
phenylalanine-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF03484.10 |
tRNA synthetase B5 domain |
3.9e-17 |
| Pfam |
PF03483.12 |
B3/4 domain |
3.1e-28 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC000299 |
| B. mori |
BGIBMGA006424-TA |
| P. humanus |
PHUM473050-PA |
| P. vanderplanki |
Pv.05138 |
| A. mellifera |
GB19053-PA |
| S. invicta |
SI2.2.0_04832 |
| D. plexippus |
DPOGS208233PA |
| T. castaneum |
TC000300 |
| H. sapiens |
ENSP00000281828 |
| A. aegypti |
AAEL004613 |
| A. gambiae |
AGAP003517 |
| H. sapiens |
ENSP00000442950 |
| H. melpomene |
HMEL010389-PA |
| C. quinquefasciatus |
CPIJ002714 |
| D. melanogaster |
FBgn0039175 |
| M. musculus |
ENSMUSG00000026245 |