MidgeBase gene description page [Pn.04095]
Outline
| Gene ID | Pn.04095 |
| Type | Protein coding gene |
| Scaffold | PnScaf3354 |
| Start | 5916 |
| End | 7026 |
| Direction | + |
Sequence
Transcript: 675 (bp)
ATGAGCGCATCGCCGGTGGCAACGCATCCGACGCTTTGTCGCGATCCTCTCGCCTTCCGCCCGCTAATCGGCCGCGGAACGCTGGAGGAGAGAATGGCACAGAAGGCGACGACAATCAAAGAGGCGATCAAACGCTTCGAGGAACGCTACCGGTGCAATGCCACCGAGGCGACCGAGGTTCATCTCGAGTTCCAGTGGCCGCCCATCGAGAAACTCGACCCCCAGCTCGGCACCCTCGTCAAGTGCGAGAAGCTGAGCCTCTCGACGAACATGATCGATAAGATCACGGGCCTGAACGGAATGCGCAACCTGAAGATCCTCTCGATCGGCCGCAACTACATCAAGACGATCTCGGGCCTCGAGCCGGTGGCGGACACGCTCGAGGAGCTGTGGATGAGCTACAACTTCATCGAGAAGCTGAAGGGCATCAACGTGCTGAAGAAGCTGCGCGTGCTCTACCTGTCCAACAACCTCGTCAAGGACTGGGTCGAGTTCAACCGGCTGCAGGAGGTCACGACCCTCGAGGAGCTGCTCTTCGTCGGCAACCCGCTGCCCGAGTCCATGGAGGAGAGCGTGTGGAAAGTCGAGGCCGCCCGCCGGCTTCCCTTCCTCAAGAAGCTCGACGGCGAGCCCGTCGTGAGGGAGGAACCCAAGGCGGTCGAGGGCGAGGCGACT
Protein: 225 (aa)
MSASPVATHPTLCRDPLAFRPLIGRGTLEERMAQKATTIKEAIKRFEERYRCNATEATEVHLEFQWPPIEKLDPQLGTLVKCEKLSLSTNMIDKITGLNGMRNLKILSIGRNYIKTISGLEPVADTLEELWMSYNFIEKLKGINVLKKLRVLYLSNNLVKDWVEFNRLQEVTTLEELLFVGNPLPESMEESVWKVEAARRLPFLKKLDGEPVVREEPKAVEGEAT
| Type | Start | End | Length |
| CDS |
5916 |
5939 |
24 |
| CDS |
6086 |
6309 |
224 |
| CDS |
6597 |
7023 |
427 |
| intron |
5940 |
6085 |
146 |
| intron |
6310 |
6596 |
287 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850241 |
dynein light chain 1 [Culex quinquefasciatus] gb|EDS31611.1| dynein light chain 1 [Culex quinquefasciatus] |
1e-75 |
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| InterPro |
IPR025875 |
Leucine rich repeats (2 copies) |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
8.1e-15 |
| Pfam |
PF13855.1 |
Leucine rich repeat |
1.7e-06 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
0.001 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
9.1e-07 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
0.0043 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000452368 |
| P. humanus |
PHUM570520-PA |
| H. sapiens |
ENSP00000310360 |
| H. sapiens |
ENSP00000451547 |
| D. plexippus |
DPOGS213092PA |
| H. sapiens |
ENSP00000452037 |
| N. vitripennis |
NV12696-PA |
| S. invicta |
SI2.2.0_09864 |
| H. sapiens |
ENSP00000439695 |
| D. melanogaster |
FBgn0033408 |
| T. castaneum |
TC010012 |
| M. musculus |
ENSMUSG00000042523 |
| H. melpomene |
HMEL006543-PA |
| A. gambiae |
AGAP004416 |
| H. sapiens |
ENSP00000453439 |
| P. humanus |
PHUM616980-PA |
| B. mori |
BGIBMGA001688-TA |
| P. vanderplanki |
Pv.10460 |
| A. mellifera |
GB18951-PA |
| D. plexippus |
DPOGS212953PA |
| D. plexippus |
DPOGS204914PA |
| A. mellifera |
GB16249-PA |
| C. quinquefasciatus |
CPIJ008673 |
| H. melpomene |
HMEL007182-PA |
| A. aegypti |
AAEL002792 |
| D. melanogaster |
FBgn0028858 |
| H. sapiens |
ENSP00000450744 |
| H. sapiens |
ENSP00000451834 |
| N. vitripennis |
NV11290-PA |