MidgeBase gene description page [Pn.04052]
Outline
| Gene ID | Pn.04052 |
| Type | Protein coding gene |
| Scaffold | PnScaf3332 |
| Start | 113621 |
| End | 115963 |
| Direction | + |
Sequence
Transcript: 1956 (bp)
ATGGCTTGTTCTACCAATGAAACAAGCAATGGTATCTTTAGATACTCGAAAGATATAAATATTAGCTTCGAGCAGATAAACTACACCGCATCAGTCGGATTCCTGAGACGTCATGATAAACATGTATTAAAAAATCTAAACGGGGAATTTCGATCACGAGAACTAACTGCCATTGTTGGGCCTTCGGGTTCAGGAAAGAGCAGTCTAATGGATATTTTATCAGGCTACAATTCAACCAGCAAAGTAACTGGAGTTATAAAAGTCAATGGAACCGTTCGAGATCAGAAGCAATTTAGGCATTTGAGCAGTTATATAATGCAGGATCATCTTCAACATCCTTACATAACCGTTCAAGAAGCAATGTCTTTTTCCGCTAATCTAAAAGTCGGAAAGGAGTTAAACGCCGACGAAAAGGAGAAGAGAATTAGTGAAATCCTCAATGATCTCGGTTTAAGTGATAAGGTTCATACAATGACTCAAGATTTGAGCGGTGGGCAACAAAAGCGACTAAGCATCGCTTTGGAAATGGTTGATTCACCTCAAATAATGTTCTTTGATGAGGTTACTACTGGGCTTGATAGCATCAGTGCCGTTCAATGCATAAAATTGCTTAAAAAGCTTGTGACCGATGGGAAGACAATAATTTGTACGATCCATCAGCCATCAGCGCTAATATTTGAAACCTTTGATCACATTTATGCAATTGCTGAGGGTCAATGCATTTACAGAGGGACTTGCAATAAAGTTGTGCCATACTTATCGGAATTCAATCTTGTGTGCCCAGAATTTCACAACCCAGCAGATTTTCTTCTTGAGATTTCAACTCATGATTATGGCTATCAAATCGATAAACTTGTAGATCGAATGCAAAACGGAAAATGCAGTGATTATTGCAAGGAGATAAAACCGACTGAGAATGGAAAGAGTCACAGTTTGCCTCAAATAAAAGCTTCCGAGATTAACCCAATTAGTGCGTGCGTAAAAAGAGCCAAACTCAATACCGGTCTAAACATCTTGGATCCCAAGAATTATTGCAGCAATTCGGACCTATACTCGACATCCTTTCTACGTCAATTCTACTATTTATACACCAGACGCTGCTTGCTTATCACAAGGAATCCATCGCTATCAGTCATGAGATTACTTATTCATGTAACGGTTGCAATTTTCATAGGCATTCTTTTCTACCAACTAGGGAATTCAGCAAAGAATATGATGAACAACTTTCGGTTCATTTTTTACACCTGCATGTTTCTTATGTACACAGCATTTTCGAGTTTGCAAACGACGTTTCCATCCGAGTTGCCAGTTGTGAAGCGCGAGCACTTCAACCGTTGGTACTCTTTTACCGCCTACTATTTGAGTCTAATTCTTGGAGACCTACCCATACAGGTCTTATGCACGGTACTCTACATTCTCATAACGTACTTTTTAACTAGTCAGCCACTCGAATGGTTTCGTTTTACGGCATTTCTTACAATAAATCTGCTCTGTACCTTTGTTGCACAAGGGGTAGGGCTCATTGTCTCGTCCGTCTGCAATATAAAGTATGGAACAATTTTGGGGAACTTTTTCATCAGCCCATTTTTGATATTTTCTGGGTTTTTCATTCAACTCAATCACGCTCACAAGTGGCTGCATTGGCTCTTTCACATTTCTTTCCTAAAATATGCTCTCGAAGGTGCCATTTATTCCATAATGGGCTTCAGACGAGAAAAACTTGAGTGCGACGAGACAGGTGATGTGCCCAAGATGTGCTATTTTTCTTATCCCAATAAGCTAATTCGGGAAATTGGAATGCAAGATTGTGCCAAAAATATAACCAGCAACTGTGATGATTACATGTATGAAGATCAAAAAAGTCATTTTCGTATAGTTATTATAGCACTCACCTTATTCATAATCGTCTTTCGTCTCATTGCGTTCTTTATAATGCGATACCGATTGAAGCACTGG
Protein: 652 (aa)
MACSTNETSNGIFRYSKDINISFEQINYTASVGFLRRHDKHVLKNLNGEFRSRELTAIVGPSGSGKSSLMDILSGYNSTSKVTGVIKVNGTVRDQKQFRHLSSYIMQDHLQHPYITVQEAMSFSANLKVGKELNADEKEKRISEILNDLGLSDKVHTMTQDLSGGQQKRLSIALEMVDSPQIMFFDEVTTGLDSISAVQCIKLLKKLVTDGKTIICTIHQPSALIFETFDHIYAIAEGQCIYRGTCNKVVPYLSEFNLVCPEFHNPADFLLEISTHDYGYQIDKLVDRMQNGKCSDYCKEIKPTENGKSHSLPQIKASEINPISACVKRAKLNTGLNILDPKNYCSNSDLYSTSFLRQFYYLYTRRCLLITRNPSLSVMRLLIHVTVAIFIGILFYQLGNSAKNMMNNFRFIFYTCMFLMYTAFSSLQTTFPSELPVVKREHFNRWYSFTAYYLSLILGDLPIQVLCTVLYILITYFLTSQPLEWFRFTAFLTINLLCTFVAQGVGLIVSSVCNIKYGTILGNFFISPFLIFSGFFIQLNHAHKWLHWLFHISFLKYALEGAIYSIMGFRREKLECDETGDVPKMCYFSYPNKLIREIGMQDCAKNITSNCDDYMYEDQKSHFRIVIIALTLFIIVFRLIAFFIMRYRLKHW
| Type | Start | End | Length |
| CDS |
113621 |
113732 |
112 |
| CDS |
113827 |
113892 |
66 |
| CDS |
113966 |
114210 |
245 |
| CDS |
114280 |
114504 |
225 |
| CDS |
114584 |
114666 |
83 |
| CDS |
114736 |
115960 |
1225 |
| intron |
113733 |
113826 |
94 |
| intron |
113893 |
113965 |
73 |
| intron |
114211 |
114279 |
69 |
| intron |
114505 |
114583 |
79 |
| intron |
114667 |
114735 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653360 |
abc transporter [Aedes aegypti] gb|EAT39580.1| abc transporter [Aedes aegypti] |
0.0 |
| InterPro |
IPR020064 |
ABC transporter, G1-like |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003439 |
ABC transporter-like |
|
| InterPro |
IPR017871 |
ABC transporter, conserved site |
|
| InterPro |
IPR013525 |
ABC-2 type transporter |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0016887 |
ATPase activity |
|
| Pfam |
PF13558.1 |
Putative exonuclease SbcCD, C subunit |
0.0021 |
| Pfam |
PF13207.1 |
AAA domain |
0.045 |
| Pfam |
PF02463.14 |
RecF/RecN/SMC N terminal domain |
0.0061 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.064 |
| Pfam |
PF13481.1 |
AAA domain |
0.083 |
| Pfam |
PF01061.19 |
ABC-2 type transporter |
4.9e-41 |
| Pfam |
PF13401.1 |
AAA domain |
0.011 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.01 |
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.0002 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.017 |
| Pfam |
PF00005.22 |
ABC transporter |
1.2e-17 |
| Pfam |
PF13476.1 |
AAA domain |
1e-05 |
| Pfam |
PF13173.1 |
AAA domain |
0.018 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
7.7e-06 |
| Pfam |
PF13304.1 |
AAA domain |
2.3e-09 |
| Pfam |
PF00905.17 |
Penicillin binding protein transpeptidase domain |
0.01 |
| Pfam |
PF13175.1 |
AAA ATPase domain |
0.0021 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.15885 |
| Pn.00864 |
| Pn.02964 |
| Pn.00866 |
| Pn.05833 |
| Pn.15693 |
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ007190 |
| P. humanus |
PHUM154210-PA |
| C. quinquefasciatus |
CPIJ019125 |
| H. melpomene |
HMEL006781-PA |
| P. humanus |
PHUM610130-PA |
| H. melpomene |
HMEL014574-PA |
| B. mori |
BGIBMGA005203-TA |
| D. plexippus |
DPOGS204358PA |
| A. mellifera |
GB17229-PA |
| A. aegypti |
AAEL013372 |
| C. quinquefasciatus |
CPIJ012364 |
| H. sapiens |
ENSP00000339744 |
| P. vanderplanki |
Pv.17069 |
| P. vanderplanki |
Pv.17417 |
| D. melanogaster |
FBgn0031516 |
| N. vitripennis |
NV14844-PA |
| P. vanderplanki |
Pv.05629 |
| H. sapiens |
ENSP00000420245 |
| H. sapiens |
ENSP00000381464 |
| H. sapiens |
ENSP00000420100 |
| D. plexippus |
DPOGS205649PA |
| H. sapiens |
ENSP00000381467 |
| C. quinquefasciatus |
CPIJ801608 |
| T. castaneum |
TC007467 |
| A. gambiae |
AGAP009850 |
| H. sapiens |
ENSP00000381475 |
| A. aegypti |
AAEL008672 |
| H. sapiens |
ENSP00000291524 |
| T. castaneum |
TC007466 |
| D. plexippus |
DPOGS212638PA |
| C. quinquefasciatus |
CPIJ007191 |
| P. vanderplanki |
Pv.07334 |
| B. mori |
BGIBMGA005202-TA |
| D. melanogaster |
FBgn0031220 |
| P. vanderplanki |
Pv.07333 |
| T. castaneum |
TC007074 |
| H. melpomene |
HMEL014575-PA |
| H. melpomene |
HMEL006594-PA |
| H. sapiens |
ENSP00000406874 |
| H. melpomene |
HMEL006780-PA |
| B. mori |
BGIBMGA005094-TA |
| P. vanderplanki |
Pv.06644 |
| D. melanogaster |
FBgn0031449 |
| N. vitripennis |
NV16927-PA |
| A. aegypti |
AAEL008629 |
| D. plexippus |
DPOGS212605PA |
| H. sapiens |
ENSP00000414541 |
| P. vanderplanki |
Pv.07332 |
| S. invicta |
SI2.2.0_00064 |
| N. vitripennis |
NV14845-PA |
| H. sapiens |
ENSP00000343820 |
| D. melanogaster |
FBgn0025683 |
| B. mori |
BGIBMGA005226-TA |
| A. mellifera |
GB19012-PA |
| T. castaneum |
TC008454 |
| D. plexippus |
DPOGS212609PA |
| C. quinquefasciatus |
CPIJ802036 |
| H. sapiens |
ENSP00000304111 |
| H. melpomene |
HMEL005297-PA |
| D. plexippus |
DPOGS205105PA |
| T. castaneum |
TC007047 |
| M. musculus |
ENSMUSG00000024030 |
| P. humanus |
PHUM349840-PA |
| A. aegypti |
AAEL008138 |
| P. humanus |
PHUM347630-PA |
| P. humanus |
PHUM602230-PA |
| A. mellifera |
GB16644-PA |
| P. humanus |
PHUM453210-PA |
| H. sapiens |
ENSP00000417667 |
| H. sapiens |
ENSP00000434318 |
| S. invicta |
SI2.2.0_03712 |
| N. vitripennis |
NV10274-PA |
| A. gambiae |
AGAP009463 |
| A. mellifera |
GB11259-PA |
| A. aegypti |
AAEL008635 |
| H. sapiens |
ENSP00000354995 |
| T. castaneum |
TC008293 |
| D. melanogaster |
FBgn0032167 |
| A. mellifera |
GB12359-PA |
| N. vitripennis |
NV11347-PA |
| N. vitripennis |
NV10033-PA |
| A. gambiae |
AGAP001858 |
| D. melanogaster |
FBgn0020762 |