MidgeBase gene description page [Pn.04038]
Outline
| Gene ID | Pn.04038 |
| Type | Protein coding gene |
| Scaffold | PnScaf3332 |
| Start | 39186 |
| End | 40789 |
| Direction | + |
Sequence
Transcript: 1140 (bp)
ATGATTTCTCAAAAGGATAACGAGGAAGGGAAGTTATTTGTGGGCGGTCTTAGTTGGGATACTCAATCTGACAGCTTGCAGCGCTATTTCGCCCGCTATGGCGAAGTAATTGATTGTGTTGTAATGAAAAATAACGAGACGGGACGATCAAGAGGTTTCGGGTTTGTGACTTTTGCCGATCCGGAAAACGTAAAGCGAGCTCTCGAAAACTGCCCTCATAGCTTGGATGGGAGGACAATCGACCCGAAGCCGTGCAATCCTCGCTCAATGCACAAACCGAAGAGGACAAATGCCGGCTATCCGAAGGTCTTTCTGGGCGGATTGCCAGCAAATGTTACTGAAAGTGATTTGAGAGCGTATTTTTCTCGCTACGGACAAGTGATGGAAGTGGTTATCATGTATGATCAAGAGAAGAAGAAAAGCCGAGGTTTTGGGTTTTTATCGTTCGATACGGAGGCCTCCGTAGATAGAGCATGTGCCGATCACTTTATCAATCTGAACGGCAAGCAGGTCGAGATTAAGAAGGCCGAGCCGCGCGACGGATCCACGAATCATATGATGCAAATGGATCCGAGCCAGTCGATTGGCGCGTCGCACTGGGGCGGACCGACGATGATGGGCAACGGCCCAATGATGGGTCCGATCAGCGTGCCAAATTTGGCAGGAAATACCGGTTTCAATTACAATTACGGCTCATCGAACCCCTCGGCCAACCCCAACTTCGGTTGGCCGCAGCAATGGGGCAGCAGCAACTATGGTGTTCCTCACCAAGCTCAACAGTCGGCTCAAGGTTACGGAGCAGCAGCTGCTTACGATTACAACGGGCCGATCGGTTACAACTCAACACCGAGCAGCTACGGAGCGAACGGCAGCAACTGGAATTCGTGGAATCCAAACTTAACGAACATCGCGCCCAACACCGGATCGTCGAGCGGAGAGCTTCAATATCGACCCCAATCGGGCCCGAACATGCACTCGGGACCGCCGCCGCCCAACTCGGGAAGTCTATCGAAGCCAGGCTCTGAGTACAATGGAGCTGCCGCTTACAACGGTGCGTACACAAACTATTACAGCGAGCAGCAGTTTAGTAATCAAAATCGACCACGTTCGTATGGAAACAACGAGCAATATCCTGCATTC
Protein: 380 (aa)
MISQKDNEEGKLFVGGLSWDTQSDSLQRYFARYGEVIDCVVMKNNETGRSRGFGFVTFADPENVKRALENCPHSLDGRTIDPKPCNPRSMHKPKRTNAGYPKVFLGGLPANVTESDLRAYFSRYGQVMEVVIMYDQEKKKSRGFGFLSFDTEASVDRACADHFINLNGKQVEIKKAEPRDGSTNHMMQMDPSQSIGASHWGGPTMMGNGPMMGPISVPNLAGNTGFNYNYGSSNPSANPNFGWPQQWGSSNYGVPHQAQQSAQGYGAAAAYDYNGPIGYNSTPSSYGANGSNWNSWNPNLTNIAPNTGSSSGELQYRPQSGPNMHSGPPPPNSGSLSKPGSEYNGAAAYNGAYTNYYSEQQFSNQNRPRSYGNNEQYPAF
| Type | Start | End | Length |
| CDS |
39186 |
39231 |
46 |
| CDS |
39436 |
39550 |
115 |
| CDS |
39657 |
39939 |
283 |
| CDS |
40091 |
40786 |
696 |
| intron |
39232 |
39435 |
204 |
| intron |
39551 |
39656 |
106 |
| intron |
39940 |
40090 |
151 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865670 |
heterogeneous nuclear ribonucleoprotein 27C [Culex quinquefasciatus] gb|EDS42060.1| heterogeneous nuclear ribonucleoprotein 27C [Culex quinquefasciatus] |
2e-97 |
| InterPro |
IPR000504 |
RNA recognition motif domain |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00076.17 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
8.4e-39 |
| Pfam |
PF13893.1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
3.3e-17 |
| Pfam |
PF08777.6 |
RNA binding motif |
0.11 |
| Pfam |
PF08206.6 |
Ribonuclease B OB domain |
0.2 |
| Pfam |
PF14259.1 |
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
5.4e-38 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.17088 |