MidgeBase gene description page [Pn.04020]
Outline
| Gene ID | Pn.04020 |
| Type | Protein coding gene |
| Scaffold | PnScaf3325 |
| Start | 19093 |
| End | 21189 |
| Direction | - |
Sequence
Transcript: 1287 (bp)
ATGGCGTACAGCGACGCATATAACCGCAGAGTTACCTACTATTACGACCCTGAAATTGGAAATCTCTACTACGGAAAGAACCATCCAATGAAGCCGCATCGCATCACTGTGGCTCACGACCTAATTGTGAACTACGGACTGTACAAGAAGATGGAAATCTACAAGCCAGGTCATGCCATGGAGAGGCATATGATGAAATTCCACACAGAGGACTACATATCGTTCTTGAAATCAATTAATTACGTGAGAGTTAACAACGATCTCAAGGGCCTGATGGACCGATTCGAGATCGGAACGAAAGAAAACGACTGTCCCGTTTTTGTCGGAGTTTTTAAATTTGCTCAAATCAGTGCTGGCGGTTCACTGTCAGCAGCTCAGCACATCAACAACAACTGCAGCGATATTGCCATCAATTGGGCCGGCGGTCTGCATCATGCAAAAAAGTCGAAGGCAAGCGGATTTTGCTACGTAAACGACATCGTTCTCTGCATCATTGAACTCCTGAAATTCCATAAGCGCGTGCTCTATGTTGACATCGACGTTCACCACGGTGATGGTGTCGAGGAAGCCTTTTACAACACTAATCGTGTAATGACTGTCAGCTTCCATCAATATGGTAAAAAATTCTTTCCCGGAACCGGCGGTCTCAACAACATCGGCACGAAAGAAGGCATAGGCTACGCCGTTAATGTTCCTTTGAAGGAAGGAATTACGGATAAGGATTATGAGAACGTTTTCTGCATTGTCATGTCCAAAGTATTGACGGCCTACGATCCAAATGTGATTGTTCTACAATGCGGAAGCGACTCAATAACAGGCGACCAACTTGGCAATTTCAACTTGACTTTGAACGCACACGGATACTGTATCAGCTTTTTACGCAAATACAATCTACCGATGATCTTGCTCGGCGGCGGAGGTTACACAATCAGCAATGTCTCGCGATGCTGGTGCTACGACACTGCAAAGGCTTTAAATGAGAACATTTCCAATTCCTTACCGAGCAGCGAATATATGAGCTACTTCAAACCCGACTATCGTTTGCACATCGCCTCCGATCCAACTATTGAGAATTGTAACACCAAAGAATATCTGAACGACGTCATCATTCAAGTCTGCGAAAATCTTCAAGAACTCGAGTCAGTTCCGAGCGTTCAATTTTTTAATTCGCCAATGTCGGCATGCGACTCCGAATTTTTGGCATCACAGGCAATGCAAAGCAAGAGTACACTTGACTGCATAGTCATCGATAACGATTCCAATTGTATTGTTATTTCCGACGAGGAG
Protein: 429 (aa)
MAYSDAYNRRVTYYYDPEIGNLYYGKNHPMKPHRITVAHDLIVNYGLYKKMEIYKPGHAMERHMMKFHTEDYISFLKSINYVRVNNDLKGLMDRFEIGTKENDCPVFVGVFKFAQISAGGSLSAAQHINNNCSDIAINWAGGLHHAKKSKASGFCYVNDIVLCIIELLKFHKRVLYVDIDVHHGDGVEEAFYNTNRVMTVSFHQYGKKFFPGTGGLNNIGTKEGIGYAVNVPLKEGITDKDYENVFCIVMSKVLTAYDPNVIVLQCGSDSITGDQLGNFNLTLNAHGYCISFLRKYNLPMILLGGGGYTISNVSRCWCYDTAKALNENISNSLPSSEYMSYFKPDYRLHIASDPTIENCNTKEYLNDVIIQVCENLQELESVPSVQFFNSPMSACDSEFLASQAMQSKSTLDCIVIDNDSNCIVISDEE
| Type | Start | End | Length |
| CDS |
19096 |
19472 |
377 |
| CDS |
19531 |
19889 |
359 |
| CDS |
19970 |
20471 |
502 |
| CDS |
21141 |
21189 |
49 |
| intron |
19473 |
19530 |
58 |
| intron |
19890 |
19969 |
80 |
| intron |
20472 |
21140 |
669 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003397521 |
PREDICTED: hypothetical protein LOC100642763 [Bombus terrestris] |
1e-133 |
| InterPro |
IPR003084 |
Histone deacetylase |
|
| InterPro |
IPR023801 |
Histone deacetylase domain |
|
| InterPro |
IPR000286 |
Histone deacetylase superfamily |
|
| Gene Ontology(BP) |
GO:0016575 |
histone deacetylation |
|
| Gene Ontology(MF) |
GO:0004407 |
histone deacetylase activity |
|
| Pfam |
PF00850.14 |
Histone deacetylase domain |
1.4e-83 |
| Pfam |
PF06866.6 |
Protein of unknown function (DUF1256) |
0.028 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.09924 |