MidgeBase gene description page [Pn.04003]
Outline
| Gene ID | Pn.04003 |
| Type | Protein coding gene |
| Scaffold | PnScaf3311 |
| Start | 16155 |
| End | 20588 |
| Direction | - |
Sequence
Transcript: 2601 (bp)
ATGTTCGATGCGCAAAAAATGCCAGTTTCGGAAGTTTCAAACAGACTTTCAAGCTTGACTGACGATAATAACATTTACAAACAATTAAAAGAGGATAATAAGCGAAAAAGTGCAAGCTGTTTTCACCCGAGTGACAGCGGTCATACGGAAGCAATTTTGTGTTTATTTGATGAGGATCCCGACTTGAGGTACTTCAAGATCGACAGGAACTTTCGAAATCAATTTCTGCACGCCGACAAAGGCGGCCCGAGGAGGAAGAGAGACAAGGAGAACAGATTCCGGCAGCAGCGACAACGACAAAAGCGAAAACTCAAAGTGGACGGCAAAAGTGAGCAGGCGGAGAAGCGAAATAGGCTCGACATGTACGACTACCGACACAACTCGACGCTTCTCAAAACGAACGACACGGGCGGTGATTTTGTGTCGTCGACGAAGACGAGCAATCACGAGGAGGACGAGGAGAACATCATCAATGCATTCTACCAGCAGCGATATTTGGGCGGAAGCAACAACTCGATTGCGACGCTCTGCAATATCGGCAACTCGTGCTATCTCAACTCGGTCATCTACACGCTCCGGTTTGCACCGTATTTCCTTCACAAGCTTCACCATCTGTGCGATGACATGCACTTTGTGTACCAGAAAATCGGACAGAATAAGCTAAAGAGCTCGTCGCTAGGACGAAATGTGAGCGGTCTACAGGGTCAAAGTGGTCGAAGTTGGAGTTCAAAGGATTTAGCATCGTTAAGCGGAACCAATAATACAGTTAATAGCAACAGTAGCAGTAGTAGTAGTAATCATAATAATCATAGTGAGCCAGTGCTGTTAAAGAATAACCGACAAGTGGTGACCGAGAAGCTGCACGAGCTCTATCAGAACCTCCATCGCAACGAGTCGATCGATACGAGCGAGTCATTTCACGCTGGCAACTTTCTCAACTCCATACAGGACGTGAGTTCAATATTCGAGGGCAATCAGCAGCAGGACGCGCACGAGCTGCTCATGTGCATCCTGGACAGCATCCGCGAGACGTGCTCCGCTCTCTCGAAGACTCTCAAGGATAATCCCGAGATTCTGCTGCCGCAGCTGAGCACGACGACGAGCGAGAGCGGCGAGCTGATGTCGCCGCCAAACTCCACCCAAACGACGCAATCCATCAAGTCGATATTCTCGCGAAAGATCAAGCGAAAAGACACGCTCAAGACGAAAAACGGCTCGCCGATGAAGGAAGTCAACGCGGAGATGTCGTCGATTGAGGAGTCGAGCGAGACGAGCAATGTCAAGAGCAGTCTCAGTAGTATAACTAATGAATCGTGTGATAGCAACGGCGTGGACGAGAAGGAGAAGATTGACGAGACAATTAAGCGCCTCGGCTTGGACTTCTTCAGCGAGGACTTCGAGGGCATTACTCTCTCGACCACCAAATGTCTAACATGCGAATCAGTCACCGAGCAGAAGGAAACCATGATTGATATTTCGATTCCGCTGGGAAATGAAAACAATCAACCTCTCGATCCGCAGATATTCTTTCAAAACTCATGTATTACAAAGGAATACTTTCGCGTGGAGAATCATTACAGATGTGATAAATGTTGCGGCTACACAGAAGCCATTCGTTCGATATCCTTTGAAGTACTTCCTCGCCTTCTAGTTCTTCACATAAAGCGATTTTCGGGTGGCATGGAGAAAATAAGCAGCTACAGTCCCACGCCATTCATCCTGAAGTGCTTCTGCAATAAATGCTACAAGAAACGGGACGAAGACAAGCTCCATATCTACAAGCTTTACAGTGTCATCACGCATGTCGGGGCGACGATGTCTGTGGGTCATTACATCGCGTACACATGTTCGCTGGACATCTACAACGAGTATGTGAGTTGTGTTCACGACAAGCGTCGATTATCGCTGTCGAACGGCTCGAAGTTAAAATCGCAGCTGCACCATTCGTCGCTGACGGGAAGTAGCGGCGGCGGCGGCGGAGGAGGAAGCGAGAAGAATTCGGGGCTGATGAAGAAGCTCATTTATGGCCGCAACAAGGCATCGAGTAGCGGCGACATGAGCAAAAATCTAAAGCCAATCAACGGACTCAGCAAAATCATGATGAACGGCATCGAGAAGTTGAATTTGAATTCCGACAAAATTAGTGCAACAAATGGCAGCAGCGGTGTCGGTGGCGCAATTAATGGGACAAACGCGGCATCGCAGCATAAAGCACCGAAAACGGTGTGCAATAGTGCAAATTGCTGTGGCATTTACATAAAAGATTTCACCAATATTGTCGAAAATTATCACAACAATAACAGCAGCAACGGTAGCAATCTAAATAATGGAGAGAAACTGCAGCAGAGCGATAATGGCAATGGCACTGCGACGGACGACGGACACGAGTTCGAGAGCAGCACGACGAGCTCGACGCCGAAGCCCTCGATAAATGATTTAAACCAGAAAGTGTGGTACATGTGCGACGACGACAAAATCAAAATAATGACCCAGCGAGAGTTCGAGGAGGCTCTGTCGAAGAACCAGAAAGTCATGATTACGCCCTATCTGCTGTTCTACGCACGCTACGACGTGAAAAATCTCAAGAATCCTGAATTTGAC
Protein: 867 (aa)
MFDAQKMPVSEVSNRLSSLTDDNNIYKQLKEDNKRKSASCFHPSDSGHTEAILCLFDEDPDLRYFKIDRNFRNQFLHADKGGPRRKRDKENRFRQQRQRQKRKLKVDGKSEQAEKRNRLDMYDYRHNSTLLKTNDTGGDFVSSTKTSNHEEDEENIINAFYQQRYLGGSNNSIATLCNIGNSCYLNSVIYTLRFAPYFLHKLHHLCDDMHFVYQKIGQNKLKSSSLGRNVSGLQGQSGRSWSSKDLASLSGTNNTVNSNSSSSSSNHNNHSEPVLLKNNRQVVTEKLHELYQNLHRNESIDTSESFHAGNFLNSIQDVSSIFEGNQQQDAHELLMCILDSIRETCSALSKTLKDNPEILLPQLSTTTSESGELMSPPNSTQTTQSIKSIFSRKIKRKDTLKTKNGSPMKEVNAEMSSIEESSETSNVKSSLSSITNESCDSNGVDEKEKIDETIKRLGLDFFSEDFEGITLSTTKCLTCESVTEQKETMIDISIPLGNENNQPLDPQIFFQNSCITKEYFRVENHYRCDKCCGYTEAIRSISFEVLPRLLVLHIKRFSGGMEKISSYSPTPFILKCFCNKCYKKRDEDKLHIYKLYSVITHVGATMSVGHYIAYTCSLDIYNEYVSCVHDKRRLSLSNGSKLKSQLHHSSLTGSSGGGGGGGSEKNSGLMKKLIYGRNKASSSGDMSKNLKPINGLSKIMMNGIEKLNLNSDKISATNGSSGVGGAINGTNAASQHKAPKTVCNSANCCGIYIKDFTNIVENYHNNNSSNGSNLNNGEKLQQSDNGNGTATDDGHEFESSTTSSTPKPSINDLNQKVWYMCDDDKIKIMTQREFEEALSKNQKVMITPYLLFYARYDVKNLKNPEFD
| Type | Start | End | Length |
| CDS |
16158 |
17092 |
935 |
| CDS |
17386 |
17518 |
133 |
| CDS |
17613 |
18443 |
831 |
| CDS |
18735 |
19429 |
695 |
| CDS |
20582 |
20588 |
7 |
| intron |
17093 |
17385 |
293 |
| intron |
17519 |
17612 |
94 |
| intron |
18444 |
18734 |
291 |
| intron |
19430 |
20581 |
1152 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865799 |
ubiquitin specific protease [Culex quinquefasciatus] gb|EDS42296.1| ubiquitin specific protease [Culex quinquefasciatus] |
1e-177 |
| InterPro |
IPR018200 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site |
|
| InterPro |
IPR001394 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 |
|
| Gene Ontology(BP) |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
| Gene Ontology(MF) |
GO:0004221 |
ubiquitin thiolesterase activity |
|
| Pfam |
PF00443.24 |
Ubiquitin carboxyl-terminal hydrolase |
2.2e-43 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA002507-TA |
| S. invicta |
SI2.2.0_01133 |
| D. melanogaster |
FBgn0028476 |
| A. gambiae |
AGAP000884 |
| A. aegypti |
AAEL011287 |
| A. mellifera |
GB13990-PA |
| C. quinquefasciatus |
CPIJ014662 |
| H. melpomene |
HMEL004756-PA |
| P. vanderplanki |
Pv.13731 |
| P. humanus |
PHUM411860-PA |
| T. castaneum |
TC004831 |
| N. vitripennis |
NV30289-PA |
| D. plexippus |
DPOGS208930PA |