MidgeBase gene description page [Pn.03992]
Outline
| Gene ID | Pn.03992 |
| Type | Protein coding gene |
| Scaffold | PnScaf3300 |
| Start | 12088 |
| End | 13548 |
| Direction | + |
Sequence
Transcript: 660 (bp)
ATGGACAATGGCTACGACGAGTCTTGTGCAAAAGAGAGTGAGCACACTTTAACAGGCCATTCGGCGAAGGTGATGGCAGCAAAATTTATGGGCGAATCACAAAAAATTGTTACGGGCTCTCATGATCGCACGCTGAAAATTTGGGACTTGAGGAGCAAAGCATGCATAGAAACGAAGTTTGCAGGAAGCAGTTGCAACGACATTGTTGTCACTACCTCTTCGACAATTATTAGTGGGCATTTTGACAAAAAAATTCGTTTTTGGGATATTCGGAGTTCGGATTGCTCATCCAACGATATTCAGCTGCAGGGTAAAGTCACTTCACTCGACTTATCGAAAGATTGTAAATTGCTTGCAGTTTGTATGCGTGATGATACTATAAAAATAATAGATCTGCGCACCAATCAAATTTTAACGACACTCTGCCACGATAACTTCAAAGTGGGTTGCGATTTTTCTCGTATCTCATTCAACTCCGATAGTAGTTGCATAGCTGCCGGTTCCTCTGATGGAAGTGTCTTTATATGGAATACTGATGGCAAAATAATGTCAATTTTAAAGGATCACACCGTGTCGGTGCAGGCTGTGAGTTTTCATCCATTCAGCGGTTTGCTAGCGTCGGTAGATCGATCAAAGAGATGCACTATATGGACTCATGTT
Protein: 220 (aa)
MDNGYDESCAKESEHTLTGHSAKVMAAKFMGESQKIVTGSHDRTLKIWDLRSKACIETKFAGSSCNDIVVTTSSTIISGHFDKKIRFWDIRSSDCSSNDIQLQGKVTSLDLSKDCKLLAVCMRDDTIKIIDLRTNQILTTLCHDNFKVGCDFSRISFNSDSSCIAAGSSDGSVFIWNTDGKIMSILKDHTVSVQAVSFHPFSGLLASVDRSKRCTIWTHV
| Type | Start | End | Length |
| CDS |
12088 |
12097 |
10 |
| CDS |
12152 |
12183 |
32 |
| CDS |
12627 |
12835 |
209 |
| CDS |
12915 |
13003 |
89 |
| CDS |
13129 |
13357 |
229 |
| CDS |
13455 |
13545 |
91 |
| intron |
12098 |
12151 |
54 |
| intron |
12184 |
12626 |
443 |
| intron |
12836 |
12914 |
79 |
| intron |
13004 |
13128 |
125 |
| intron |
13358 |
13454 |
97 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003436086 |
AGAP002315-PC [Anopheles gambiae str. PEST] gb|EGK96927.1| AGAP002315-PC [Anopheles gambiae str. PEST] |
2e-76 |
| InterPro |
IPR019775 |
WD40 repeat, conserved site |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| InterPro |
IPR020472 |
G-protein beta WD-40 repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
1.1e-28 |
| Pfam |
PF11715.3 |
Nucleoporin Nup120/160 |
9.2e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000375872 |
| S. invicta |
SI2.2.0_05373 |
| P. vanderplanki |
Pv.11663 |
| A. mellifera |
GB12735-PA |
| M. musculus |
ENSMUSG00000026289 |
| D. plexippus |
DPOGS211026PA |
| H. sapiens |
ENSP00000375875 |
| T. castaneum |
TC004086 |
| C. quinquefasciatus |
CPIJ005071 |
| H. sapiens |
ENSP00000375873 |
| A. gambiae |
AGAP002315 |
| P. humanus |
PHUM495740-PA |
| P. humanus |
PHUM495970-PA |
| H. sapiens |
ENSP00000318259 |
| A. aegypti |
AAEL007574 |
| N. vitripennis |
NV24723-PA |
| A. aegypti |
AAEL007570 |
| A. mellifera |
GB16222-PA |
| D. plexippus |
DPOGS211024PA |
| D. melanogaster |
FBgn0039705 |
| H. melpomene |
HMEL007145-PA |
| C. quinquefasciatus |
CPIJ005067 |
| S. invicta |
SI2.2.0_12857 |
| H. melpomene |
HMEL004907-PA |
| T. castaneum |
TC002674 |
| N. vitripennis |
NV15488-PA |
| P. vanderplanki |
Pv.11665 |
| H. sapiens |
ENSP00000362625 |
| B. mori |
BGIBMGA006504-TA |