MidgeBase gene description page [Pn.03980]
Outline
| Gene ID | Pn.03980 |
| Type | Protein coding gene |
| Scaffold | PnScaf3299 |
| Start | 45010 |
| End | 50092 |
| Direction | + |
Sequence
Transcript: 2058 (bp)
ATGGAGCATATAAAAATACCAAAGGTCGAGAATGTCCGAATGATTGACAGATATAACAGCAAAAATGCAATTGTTGGAACACTGTACTTGACCGCAACTCACCTTATATTTGTAGATCCTGAGGCTAACAAAGAAACATGGATCCTCCACACGCACATTGCTAACATAGAAAAGCAGCCACTAACTACGACTGGTTCTCCGCTTCTGATTCGCTGTAAAACGTTTCTCTCCGTAACTTTTGTAATTGCAAAAGAACGTGAATGTCATGATGTTTACACTACACTCATAAAACTATGTCAACCAGTGAACATCCAAAATCTCTATTGCTTTCAATACACATCCAGCAGCGAGGAGCTCGCAAAATCAGCGGGCTGGGATTTCTTCAGGCTTGAGACCGAATATAAAAGAATGAAGGTGCCAAATGATGACTGGCAATTGTCAACGATGAATAAGAACTATGAGCTGTGTGACACTTATCCGAATCAAATTTACATTCCTAATAGTGTTGATAAGACAGTTTTATTAGGAAGTTCGAGGTTTCGAAGCAAAGGACGTTTGCCCGCGCTTACTTACTTGCATCCAAACAAAGCTTCTATATGTCGCTGTTCGCAACCTTTGTCAGGTTTTTCGGCTCGTTGCGTAGAGGATGAGCAAATGTTACAAGAAATCCGGAAAACAAACCCCAATTCAAACATTCTATATGTCGTTGACACTCGGCCGAGGATTAATGCAATGGCCAACCGAGCCGCTGGCAAAGGATATGAAAACGAATTGTTCTACGAGAATACCAAGTTTCATTTTTTGGGCATCGAAAACATTCACACCATGAGGGCGAGTTTGCAAAAACTCATTGAGACTTGCGAACAAAAGTCAATGAGCGGTTTTCTCAGTGCTCTGGAGTCGTCAGGATGGCTAAAGCACATTCGCTCAATGCTAGACACGTCTTACTTCATAGCGAATGCAGTTTACAAGGGAATTTCAGTTGTTGTTCACTGCTCAGATGGTTGGGATAGAACAAGCCAGGTTTGCTCTCTTGCAGCTCTAATGCTTGATCCATTCTATCGTACAATAAAAGGGTTTCAATCTCTCATCGAAAAGGATTGGCTAGCCTTCGGACATAAATTCAGCGAAAGATGCGGACACTTACAGACAGATCCGAAAGAGATTTCACCAATATTCACACAATTTCTCGAGAGTGTTTGGCAAATAATGCAGCAGCAAGTTGATGCATTCGAGTTCAATGAAAGATTTCTCCTCATTCTCCACGATCATGTGATGAGCTGTCAGTTCGGAACCTTTATTGGAAATTGCGAAAAAGACAGAATTGACTTGAAATTGGCTGAAAAGACTTTTTCCCTTTGGGGATTTATGGCAAACCACATGAACGAATATTTGAATCCTCTGTACAAGCCAGGCGAAGTGGATGACATTATTGTGCCGAATCTTGCACCACAATGTATCAAGTTTTGGCGAGGAATGTACAGCCGGTTTGATCATGGCGTTCATCCACGCGAAGATCTATCAGATTTACTACTAGCAAATAAGGATCACTGCAGCTCGCTCGACGATCACGTTCAACATTTAACAAAGAGAATTGGTAACTTGAAGAATTTGATTTCAAAGTCGGCCAAGAAACTGCAGGCAAACAGTGCAACTTTACTACAAAATGCCACTGGCAAAAACTCGGACAATAAATTCAATTACGACAACAAAAAATTGAGCGAGCTTCAGTCGGCGGACCACGATCATCCTCTCAAGCTTTCCGATAACTATTCCTTTTCGAATTTATCAGTATCTGAATGCAACACCGCTGAGGTCGATCAGATAGCATCTGAAATTAATTCTGTCGCCTTGGATTGGAAGAGCTTACGGTCTGCTAGTGCTTGTTCTTGCTCAACTCCATTTTCGCAGGAAATGAAAAAGACTCATTGTTGGCGCTGTGGTGAAATTTTCTGTACGAGATGCATCGATAAGTCAATTCCTCTTCCTGGGCATCACTCCAAAAAGCCAGTTCCCGTATGTAGAGCTTGTTTTAAACTGGTGACGACAGTTAGTCCT
Protein: 686 (aa)
MEHIKIPKVENVRMIDRYNSKNAIVGTLYLTATHLIFVDPEANKETWILHTHIANIEKQPLTTTGSPLLIRCKTFLSVTFVIAKERECHDVYTTLIKLCQPVNIQNLYCFQYTSSSEELAKSAGWDFFRLETEYKRMKVPNDDWQLSTMNKNYELCDTYPNQIYIPNSVDKTVLLGSSRFRSKGRLPALTYLHPNKASICRCSQPLSGFSARCVEDEQMLQEIRKTNPNSNILYVVDTRPRINAMANRAAGKGYENELFYENTKFHFLGIENIHTMRASLQKLIETCEQKSMSGFLSALESSGWLKHIRSMLDTSYFIANAVYKGISVVVHCSDGWDRTSQVCSLAALMLDPFYRTIKGFQSLIEKDWLAFGHKFSERCGHLQTDPKEISPIFTQFLESVWQIMQQQVDAFEFNERFLLILHDHVMSCQFGTFIGNCEKDRIDLKLAEKTFSLWGFMANHMNEYLNPLYKPGEVDDIIVPNLAPQCIKFWRGMYSRFDHGVHPREDLSDLLLANKDHCSSLDDHVQHLTKRIGNLKNLISKSAKKLQANSATLLQNATGKNSDNKFNYDNKKLSELQSADHDHPLKLSDNYSFSNLSVSECNTAEVDQIASEINSVALDWKSLRSASACSCSTPFSQEMKKTHCWRCGEIFCTRCIDKSIPLPGHHSKKPVPVCRACFKLVTTVSP
| Type | Start | End | Length |
| CDS |
45010 |
45033 |
24 |
| CDS |
46278 |
46394 |
117 |
| CDS |
46713 |
46875 |
163 |
| CDS |
47881 |
48299 |
419 |
| CDS |
48364 |
48640 |
277 |
| CDS |
48727 |
48739 |
13 |
| CDS |
48799 |
48884 |
86 |
| CDS |
48959 |
49023 |
65 |
| CDS |
49082 |
49507 |
426 |
| CDS |
49563 |
49895 |
333 |
| CDS |
49955 |
50089 |
135 |
| intron |
45034 |
46277 |
1244 |
| intron |
46395 |
46712 |
318 |
| intron |
46876 |
47880 |
1005 |
| intron |
48300 |
48363 |
64 |
| intron |
48641 |
48726 |
86 |
| intron |
48740 |
48798 |
59 |
| intron |
48885 |
48958 |
74 |
| intron |
49024 |
49081 |
58 |
| intron |
49508 |
49562 |
55 |
| intron |
49896 |
49954 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001688643 |
AGAP005341-PA [Anopheles gambiae str. PEST] gb|EDO63649.1| AGAP005341-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR003595 |
Protein-tyrosine phosphatase, catalytic |
|
| InterPro |
IPR017906 |
Myotubularin phosphatase domain |
|
| InterPro |
IPR010569 |
Myotubularin-related |
|
| InterPro |
IPR016130 |
Protein-tyrosine phosphatase, active site |
|
| InterPro |
IPR000306 |
Zinc finger, FYVE-type |
|
| InterPro |
IPR017455 |
Zinc finger, FYVE-related |
|
| InterPro |
IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
|
| InterPro |
IPR011011 |
Zinc finger, FYVE/PHD-type |
|
| Gene Ontology(BP) |
GO:0016311 |
dephosphorylation |
|
| Gene Ontology(MF) |
GO:0046872 |
metal ion binding |
|
| Gene Ontology(MF) |
GO:0004725 |
protein tyrosine phosphatase activity |
|
| Gene Ontology(MF) |
GO:0016791 |
phosphatase activity |
|
| Pfam |
PF11605.3 |
Vacuolar protein sorting protein 36 Vps36 |
0.072 |
| Pfam |
PF13849.1 |
Myotubularin Y_phosphatase-like |
8.2e-33 |
| Pfam |
PF00102.22 |
Protein-tyrosine phosphatase |
0.0084 |
| Pfam |
PF13350.1 |
Tyrosine phosphatase family |
0.025 |
| Pfam |
PF06602.9 |
Myotubularin-related |
5.2e-40 |
| Pfam |
PF12489.3 |
Nuclear coactivator |
0.071 |
| Pfam |
PF01363.16 |
FYVE zinc finger |
7.5e-11 |
| Pfam |
PF00782.15 |
Dual specificity phosphatase, catalytic domain |
0.011 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000363985 |
| A. gambiae |
AGAP005341 |
| B. mori |
BGIBMGA009288-TA |
| C. quinquefasciatus |
CPIJ000006 |
| M. musculus |
ENSMUSG00000021987 |
| N. vitripennis |
NV16382-PA |
| A. mellifera |
GB11368-PA |
| H. sapiens |
ENSP00000180173 |
| H. sapiens |
ENSP00000405490 |
| H. sapiens |
ENSP00000394003 |
| H. melpomene |
HMEL005622-PA |
| H. sapiens |
ENSP00000379435 |
| A. aegypti |
AAEL003083 |
| P. humanus |
PHUM060700-PA |
| D. plexippus |
DPOGS216123PA |
| H. sapiens |
ENSP00000355195 |
| T. castaneum |
TC008066 |
| M. musculus |
ENSMUSG00000039431 |
| D. melanogaster |
FBgn0028497 |
| P. vanderplanki |
Pv.00391 |
| H. sapiens |
ENSP00000443161 |
| M. musculus |
ENSMUSG00000031204 |
| H. sapiens |
ENSP00000371221 |
| H. sapiens |
ENSP00000381171 |
| S. invicta |
SI2.2.0_80297 |
| H. sapiens |
ENSP00000429733 |