MidgeBase gene description page [Pn.03971]
Outline
| Gene ID | Pn.03971 |
| Type | Protein coding gene |
| Scaffold | PnScaf3297 |
| Start | 499 |
| End | 4557 |
| Direction | - |
Sequence
Transcript: 3450 (bp)
ATGTGGATGCCTTTGCTACTGATTTGCTGGAAAATTACCGAAGCGCTTTGCTCAAACTCCAGGTTCGAAATGCCAAAGTGCAGCAATGCTCTGACGCGAGCTGTCGTTGACATTGTGCGAGATTTTTACGTGAAGGACGCGAACACGATGAACATCTACCAGGTCGGCTCTGATGAAGCGGCAGTCACGAGAAACCGCGACACGATCAACGAAATCCTCGACCGAGTGAAATTCATGGAGATTATGGTGCGATTGGAAAATCATTTGCAAATGAGCGAGGTGAAGAAGAAGCGGGCGCACAATCTGCTCTTCATCGACTCTTACGAGTCGTTCATGGCTTTCTTCAGCTCAATATCGGCGAATTATTTCGAGTCGCAGGGATTTTACCTGATTGCGCTGACAACCTACACGTACGACCAGTACTCGATCATGTCCAACATCTTTTCGCATCTTTGGAATGTCTACGTCGTGAACGTTGATGTCATTTGGATGTCTTCGGAAAACGAGGCGTTTCTGTACACTTACTACCCTTTCACGAACTTTTACTGTGGAAAATCGTATCCGGTGCAGCTGAATCAGTATTTGTTTGGCAAATGGCTTCAAGCCTTGTCGAACGGTTTTTTTCCACAAAAAATGCAGAACCTTCACGGCTGCCCGCTGAGCGCGGCAATTGTCCTCACCGGACCGTTTATGAGACTTCTGGAATTCGCAAATGGCTCGCGCATCGCCGATGGTCTCTACGGCGCTCTCTTGCACGAAATCGCCGAGAGAATGAATTTCACGTTGAACTTGGTTGTGTCCTCGGACCAAGGCATTTTACATGAAAACGGCACCATCGACGGAGCTGCAAAGTTGGTCGTCAACAAGGAAGTGAACCTCACGATCGGCTACAATGCGATGACAGCCGAAAAGAACTCCTTCATGACTGCCTCCTACATCTACCACACGTCGAACCTCGTTTGGATCGTTCCACCCGGCAGACTCTTCACCTCAATGCAGAAACTGCAAAAGCCTTTCCGACTCGTTTTGTGGTGCCTCGTGATAACTTTTTTCGTGGCTAGCTTTGCCGTCGTGTGTTTCCTGAAAATGAGGAAAAGGGTTGTGCAGAACTTTGTCTTTGGCAGGGAAATGTCGACGCCCGGTCTCAACATCATCAACGTTTTCTTCGGCGGTTCTTTGCATAAGCTTCCGAGACGAAATTTTGCGAGAACTCTGCTCATCATGTTCATGTTTTACTGCTTGGTGATAAGGAGCTCGTACCAGGGAGCGCTCTTCAATTTCATGCGCAGCGATTTTCGAGAAAATCCGGCAAAAGACATGGCAGCGATGGTGGAAAAGGATTTTTCTTTCTACGTGATCGAATCGTCGATCGACTTTGTTAGTGAGCTTCCGGATGTCTTCAAGAGAACAGTGATCATCGAGCGTGAGGACCTGAAGGAGATTCAGCAGCGTCTGCTGGACTTTGAATTCAAAGGCGCACTTTTGAGTTCCGAAGAGCACGTCGCATGGCTCAACGGAATCGTAACTCCATACAAATTTTACCATTACGCCGACGAGGTGGTTTCTGTGTTTAATCTGTGCATTTACATGCATCAGCAGACGTGTCTGGCGCACAGCATTAACAACAATATAATAAAGCTCACAAATAGCGGCTTGATGGAGTCGTGGACGAAAACCTTCGTCGACCGCTCCTACTTGAAAGTTCGCCCAAACGTGGAGCAAAAGACCCTCGACATCGAGAAGCTTTCGGGGGCTTTCGAGCTCCTCGTGTACGGTCTTATGCGCCGAAATTACGACCTTATCAACGAGATTCTAGGCCACGTCCGAAAAATGGACATTTCCGTGCGACTGGAGGACCATGCGAGCTTAAGAGCACTCCGAAAAAAGCGAGTTCACAACATAATTTTCGTCGACACATTCGCATCGTTCATGAGCTTCTACGAGTCTGTTGATACCGATAGCTTCGAGTTTCAAGGTTACTATCTGATCGTACTGACAAAGTGCGTGAGCGACCAATACGCAGTGATCGCGAGGATTTTCGCGGCTTTGTGGAAGGAATATTTGACCGGTGTGAATGTAATTTGGATGCCGAACGAAAATGAGGCGCTTCTGTACACTTACTTTCCCTACTCGAGGTTCTATTGCGGCGAGTCGCGACCGGTGCTTTGGGAACACTATCGAGTCGACAGATGGCTCCGCAACCAGTCCATCTTCTTCCCACCCAAAATGAAGAACCTCCACAAGTGTCCGCTGAGCGCTGCCGTTGTGCTATCGCAGCCCTTCATGAGTCTCTGGAACGTCGGCAACGGAACGCTTCTGCCGGACAGCATCGAGGGAATTTTGCTGCGCGTCATCTCGCAACAAATGAATTTCACGCTGAACCTCGTTGTGGCGCCTGATCGCGGAATTTTCTACCAAAACGGGTCCATTGATGGTGCGGCCAAGATGGTTGTCGACCGTGCGGTCAACATGACGATGGGCTACACTTCGATGTCGGCCGAAAGAAATCTGCACATGACGCCTTCCTACGTCTATCACACGTCGAACATAATTTGGATAGTTCCGCCCGGTCGGCTGCTCAACTCACTCGACAAGCTCGGGAAGCCCTTTAGGCTCGTCCTCTGGTTCCTGGCGGTCTTCGTTTTTGTCATCTCCTACATCACGGTTGTCGTGCTGAAATTCCAGAACAAAACCATTCAGAACTTTGTTTTCGGCAAGGATATGTCGACGCCCGGTCTCAATGTCATCAATGTGTGTTTCGGCGGTTCCTTGCACAAGCTTCCGAAGAGAAACTTTGCGCGCACTTTACTGGCCTTTTTCATGTTTTACTGTCTCGTCATTAGGAGCTCGTACCAGGGAGCTCTGTACAACTTCATGCGCAGCGACTTTCGAGAGGAGCCCGTGAAAAACATGAAGCAAATGCTCGAGCGGAACTTCACCTTCTATGCCATCAAGTCGTCTATCGACTTTGTCAGCAAGTTGCCGCGCGTGATGGAGCGACTGGGCAAGATTGAACGCTCGCAGGTCGAGGACATCCGCAGGAAGCTCCTCTCGTCCGACTTCAATGGCGGCCTGCTCACATCGGAAGATCATGCTGCATGGCTGAACGAGGAAATCGCTCCCGAGGACTACTACCGCTACACTCAAGAAATCGTGTCTGTCTTCAATCTGTGCATGTACATGCATCGCAAGACATGCCTGGCGCGCAGAATCAACAAGCAAATCATAAAGCTCACCAACAGTGGACTGCTGGACGCGTGGACGAAGAAATTCATCGACAGATCGTACTTGACGCCCAAACAAGACGAAACGATCAAGCAATTGGATATTGAGAAGCTCTCCGGGGCGTTTGTCCTTCTTTTTCATGGCTTGGCTTTGGCGCTTGTTGTTTTCATCATCGAGGGCATATCAGCACGAATCAAACGTCTCAACAACTTCATGAGGCATTTG
Protein: 1150 (aa)
MWMPLLLICWKITEALCSNSRFEMPKCSNALTRAVVDIVRDFYVKDANTMNIYQVGSDEAAVTRNRDTINEILDRVKFMEIMVRLENHLQMSEVKKKRAHNLLFIDSYESFMAFFSSISANYFESQGFYLIALTTYTYDQYSIMSNIFSHLWNVYVVNVDVIWMSSENEAFLYTYYPFTNFYCGKSYPVQLNQYLFGKWLQALSNGFFPQKMQNLHGCPLSAAIVLTGPFMRLLEFANGSRIADGLYGALLHEIAERMNFTLNLVVSSDQGILHENGTIDGAAKLVVNKEVNLTIGYNAMTAEKNSFMTASYIYHTSNLVWIVPPGRLFTSMQKLQKPFRLVLWCLVITFFVASFAVVCFLKMRKRVVQNFVFGREMSTPGLNIINVFFGGSLHKLPRRNFARTLLIMFMFYCLVIRSSYQGALFNFMRSDFRENPAKDMAAMVEKDFSFYVIESSIDFVSELPDVFKRTVIIEREDLKEIQQRLLDFEFKGALLSSEEHVAWLNGIVTPYKFYHYADEVVSVFNLCIYMHQQTCLAHSINNNIIKLTNSGLMESWTKTFVDRSYLKVRPNVEQKTLDIEKLSGAFELLVYGLMRRNYDLINEILGHVRKMDISVRLEDHASLRALRKKRVHNIIFVDTFASFMSFYESVDTDSFEFQGYYLIVLTKCVSDQYAVIARIFAALWKEYLTGVNVIWMPNENEALLYTYFPYSRFYCGESRPVLWEHYRVDRWLRNQSIFFPPKMKNLHKCPLSAAVVLSQPFMSLWNVGNGTLLPDSIEGILLRVISQQMNFTLNLVVAPDRGIFYQNGSIDGAAKMVVDRAVNMTMGYTSMSAERNLHMTPSYVYHTSNIIWIVPPGRLLNSLDKLGKPFRLVLWFLAVFVFVISYITVVVLKFQNKTIQNFVFGKDMSTPGLNVINVCFGGSLHKLPKRNFARTLLAFFMFYCLVIRSSYQGALYNFMRSDFREEPVKNMKQMLERNFTFYAIKSSIDFVSKLPRVMERLGKIERSQVEDIRRKLLSSDFNGGLLTSEDHAAWLNEEIAPEDYYRYTQEIVSVFNLCMYMHRKTCLARRINKQIIKLTNSGLLDAWTKKFIDRSYLTPKQDETIKQLDIEKLSGAFVLLFHGLALALVVFIIEGISARIKRLNNFMRHL
| Type | Start | End | Length |
| CDS |
502 |
952 |
451 |
| CDS |
1093 |
2309 |
1217 |
| CDS |
2706 |
3081 |
376 |
| CDS |
3152 |
4557 |
1406 |
| intron |
953 |
1092 |
140 |
| intron |
2310 |
2705 |
396 |
| intron |
3082 |
3151 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865804 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS42301.1| conserved hypothetical protein [Culex quinquefasciatus] |
3e-73 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
1.1e-19 |
| Pfam |
PF10613.4 |
Ligated ion channel L-glutamate- and glycine-binding site |
0.065 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
0.00014 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.03499 |