MidgeBase gene description page [Pn.03809]
Outline
| Gene ID | Pn.03809 |
| Type | Protein coding gene |
| Scaffold | PnScaf3122 |
| Start | 12033 |
| End | 13324 |
| Direction | + |
Sequence
Transcript: 927 (bp)
ATGTTGGAGAGAAATTATGAGTTGAAGAGTGAGAATCTGGCCATTACATTAGAAAATGAGAAATTACGAAAAGGAATTGGCGAGGATCCTTCATCGTCATCTCTTAGGATACAGAGTCTTGAGAAGAAGCTGCTGGAGAAACAAGAGGAACTTATGGAGTTTCATAAACGGAAAAGCGATCACCAGCAAATCATAATTGATTTTAATTTCAAAGTATCAGATTTGCAAAAACAGCTGGAGCAGAAAACCCTAAGCCTAAATGAACAATCAAAACTTAATCAGACTCTCAAAGCAGAAATTCAAATGCTTACAGTCAAAGTCGTCAAATTGGAGGAGTTAAATTCTGTTCTAAAAGATGAGCACACTGCTTTACATTTACTCTACTTATCTTCAGAAGAAAAACTCAGAAAAACACAAGCTGAAAATAGTCAATTGTTGGAACGATTAATGAAGTCAAAAGCAAAGGATGCCGAGAAAATGAATGAGGAAAATGAAACATTCTTGAGGAAAAAGAATGATGCAATGAAAAGAGAGCTCGCTGAAGCGATGAATAGTGACTCTGTTCTTTCGCCAGCGGTTCCACTTAATGAAGAAGGATTCTTTCACGGAGCAATAGCGGGTGGACCTAATGTTTTCTTTGGGGATGAAATTCCTAATAAGGTACACATACAGTTCGACTGCAACGAAGGTGAAGTAAATGCAGTAAAGTGGAGTCCGCTCGACAGAATGATAGCAACGGGTGGAGCTGATAGAAAAGTGAAATTGTGGGATGTAGGCAAAGGAAATTCTTATGAGCTCAGGGGAAATCTAATAGGAAGCAACCAAGCTGTTAACAGTCTGGACTTTGATTCAACGGGAACTCTTATTTTAGCTTCTTCAAATGACTACGCCAGCAGAGTTTGGGGAATAGGTGACCATAGACTAAGA
Protein: 309 (aa)
MLERNYELKSENLAITLENEKLRKGIGEDPSSSSLRIQSLEKKLLEKQEELMEFHKRKSDHQQIIIDFNFKVSDLQKQLEQKTLSLNEQSKLNQTLKAEIQMLTVKVVKLEELNSVLKDEHTALHLLYLSSEEKLRKTQAENSQLLERLMKSKAKDAEKMNEENETFLRKKNDAMKRELAEAMNSDSVLSPAVPLNEEGFFHGAIAGGPNVFFGDEIPNKVHIQFDCNEGEVNAVKWSPLDRMIATGGADRKVKLWDVGKGNSYELRGNLIGSNQAVNSLDFDSTGTLILASSNDYASRVWGIGDHRLR
| Type | Start | End | Length |
| CDS |
12033 |
12286 |
254 |
| CDS |
12357 |
12608 |
252 |
| CDS |
12668 |
12942 |
275 |
| CDS |
13026 |
13171 |
146 |
| intron |
12287 |
12356 |
70 |
| intron |
12609 |
12667 |
59 |
| intron |
12943 |
13025 |
83 |
| intron |
13172 |
13321 |
150 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002005595 |
GI20554 [Drosophila mojavensis] gb|EDW09530.1| GI20554 [Drosophila mojavensis] |
5e-72 |
| InterPro |
IPR019775 |
WD40 repeat, conserved site |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| InterPro |
IPR013923 |
Autophagy-related protein 16 |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF08614.6 |
Autophagy protein 16 (ATG16) |
1.5e-23 |
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
7.4e-14 |
| Pfam |
PF04156.9 |
IncA protein |
0.55 |
| Pfam |
PF08662.6 |
Eukaryotic translation initiation factor eIF2A |
0.023 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000375872 |
| S. invicta |
SI2.2.0_05373 |
| P. vanderplanki |
Pv.11663 |
| A. mellifera |
GB12735-PA |
| M. musculus |
ENSMUSG00000026289 |
| D. plexippus |
DPOGS211026PA |
| H. sapiens |
ENSP00000375875 |
| T. castaneum |
TC004086 |
| C. quinquefasciatus |
CPIJ005071 |
| H. sapiens |
ENSP00000375873 |
| A. gambiae |
AGAP002315 |
| P. humanus |
PHUM495740-PA |
| P. humanus |
PHUM495970-PA |
| H. sapiens |
ENSP00000318259 |
| A. aegypti |
AAEL007574 |
| N. vitripennis |
NV24723-PA |
| A. aegypti |
AAEL007570 |
| A. mellifera |
GB16222-PA |
| D. plexippus |
DPOGS211024PA |
| D. melanogaster |
FBgn0039705 |
| H. melpomene |
HMEL007145-PA |
| C. quinquefasciatus |
CPIJ005067 |
| S. invicta |
SI2.2.0_12857 |
| H. melpomene |
HMEL004907-PA |
| T. castaneum |
TC002674 |
| N. vitripennis |
NV15488-PA |
| P. vanderplanki |
Pv.11665 |
| H. sapiens |
ENSP00000362625 |
| B. mori |
BGIBMGA006504-TA |