MidgeBase gene description page [Pn.03787]
Outline
| Gene ID | Pn.03787 |
| Type | Protein coding gene |
| Scaffold | PnScaf3121 |
| Start | 8612 |
| End | 10250 |
| Direction | + |
Sequence
Transcript: 909 (bp)
ATGCGATCTCCGTGGTTTTGGCTCGCCGTCGCTGCAATCGTCGCTGAAAGTGCGTGCGAAAATGTCACTCAAAACTACACGCCAATTGTCATGTGGCATGGCATGGGTGACTCATGTTGCTTTCCATTCTCGCTCGGGTCCATTAAGCGACTGCTGCAGAAGTCGCTGGACAACCGCGTCTATGTGACTTCGCTCGAAATCGGCGGCTCGTACGTTCGCGACTACGAATCTGGGTATTTTATTCATCCCGATAAGCAACTGCAAGACGCCTGCACCCAAATAGCGAACAACAAAAATCTCTCGAATGGCTTCAATGCCATCGGCTTCTCGCAGGGATCGCAGTTCTTACGAGCTCTCGTCCAGCGATGCCCAGCTGCCAAGGTCAAGAACCTCATCTCGCTCGGTGGCCAGCATCAAGGCGTCTACGGTCTTCCAAACTGCCCATCTCTCACCACGAAATCATGCGAGTACTTCCGCGAGCTTCTCAACTTCGCTGCCTATGCCGGATGGGTACAAAGACGCCTCGTGCAGGCCACCTACTGGCACGACCCCAAAAACGAGGACCTTTACCGCACGAAGAGCACTTTTCTCGCCGAAATCAACAACGAACGCAAAGTCAATCAGATCTACGTCAATAGACTGCAAAAACTTGATAACTTCGTGATGGTGAAATTCATGAACGACACGATTGTGCAGCCAGTTGACACACAGTGGTTCGGCTTCTACAAACCCGGTAGCGACAGCGAGACGATGACGCTCGAGGAGAGCGAGCTCTTCACCAAAGACAGGCTCGGACTGAAGAAAATGAAGGAGGCGGGAAAGATCAAGTACCTGGCTGTCGAGGGCAATCATTTGCAGATCAAGAACGAGTGGTTCGTTGAGAATCTTGTGAATGTTTACTTAAAGAAT
Protein: 303 (aa)
MRSPWFWLAVAAIVAESACENVTQNYTPIVMWHGMGDSCCFPFSLGSIKRLLQKSLDNRVYVTSLEIGGSYVRDYESGYFIHPDKQLQDACTQIANNKNLSNGFNAIGFSQGSQFLRALVQRCPAAKVKNLISLGGQHQGVYGLPNCPSLTTKSCEYFRELLNFAAYAGWVQRRLVQATYWHDPKNEDLYRTKSTFLAEINNERKVNQIYVNRLQKLDNFVMVKFMNDTIVQPVDTQWFGFYKPGSDSETMTLEESELFTKDRLGLKKMKEAGKIKYLAVEGNHLQIKNEWFVENLVNVYLKN
| Type | Start | End | Length |
| CDS |
8612 |
8701 |
90 |
| CDS |
8793 |
8960 |
168 |
| CDS |
9255 |
9414 |
160 |
| CDS |
9757 |
10247 |
491 |
| intron |
8702 |
8792 |
91 |
| intron |
8961 |
9254 |
294 |
| intron |
9415 |
9756 |
342 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001842712 |
palmitoyl-protein thioesterase 1 [Culex quinquefasciatus] gb|EDS27414.1| palmitoyl-protein thioesterase 1 [Culex quinquefasciatus] |
1e-106 |
| InterPro |
IPR002472 |
Palmitoyl protein thioesterase |
|
| Gene Ontology(BP) |
GO:0006464 |
protein modification process |
|
| Gene Ontology(MF) |
GO:0008474 |
palmitoyl-(protein) hydrolase activity |
|
| Pfam |
PF00561.15 |
alpha/beta hydrolase fold |
0.00054 |
| Pfam |
PF02089.10 |
Palmitoyl protein thioesterase |
4.6e-106 |
| Pfam |
PF01674.13 |
Lipase (class 2) |
0.0012 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV13913-PA |
| H. sapiens |
ENSP00000392293 |
| H. melpomene |
HMEL008562-PA |
| C. quinquefasciatus |
CPIJ801476 |
| H. sapiens |
ENSP00000361865 |
| M. musculus |
ENSMUSG00000028657 |
| H. sapiens |
ENSP00000432053 |
| D. melanogaster |
FBgn0030057 |
| H. sapiens |
ENSP00000403207 |
| A. mellifera |
GB17595-PA |
| D. plexippus |
DPOGS213554PA |
| P. humanus |
PHUM566810-PA |
| H. sapiens |
ENSP00000394863 |
| T. castaneum |
TC011538 |
| P. vanderplanki |
Pv.13976 |
| A. gambiae |
AGAP001058 |
| S. invicta |
SI2.2.0_10781 |
| A. aegypti |
AAEL007828 |
| A. aegypti |
AAEL015038 |
| B. mori |
BGIBMGA011835-TA |