MidgeBase gene description page [Pn.03758]
Outline
| Gene ID | Pn.03758 |
| Type | Protein coding gene |
| Scaffold | PnScaf3105 |
| Start | 7643 |
| End | 8331 |
| Direction | - |
Sequence
Transcript: 567 (bp)
ATGGATCGTGCATTGGCAATCTTCGAAGACCCTTTCTTCTACCATGGCTTTGAGCCCCGTTTTGGACTCGGTCTCCTCCCTTCGGATTTATTCTCCGATCGCATTCTTCCTCGCTCGTCGGTTCATCATTTGTCGACCGGTTACCGCCGTCCCTGGCAATTGGCTCGCGAAGCATTCAAAGAGCTTTCAACTGACCAAAAATCTATGAATTTCGGCAAGGACGGCTTCCAGGCTTGCGTCGATGTCCATCACTTTGAGCCAAATGAAATCACCGTGAAGACCGTCGACAACACTGTAATCGTGGAGGGCAAGCACGAGGAAAGAGATGACGAACATGGCTCGATCCAACGCCACTTTGTTCGCAAATATGTTTTGCCAAAGGAATACGACATGAACACCGTTCAATCCACCTTGTCGTCGGACGGCGTTCTCACCATCAAGGCTCCCTTGCCGGCCATCAAAGACTCGGGCGAGCGCCAGGTTCCAATTACTCACACGAACATGCCGGCTCACTTGAGCATTAAATCCAACAAATCGAAGGAGGGAGAGGAGGACGGAAAGGCACAC
Protein: 189 (aa)
MDRALAIFEDPFFYHGFEPRFGLGLLPSDLFSDRILPRSSVHHLSTGYRRPWQLAREAFKELSTDQKSMNFGKDGFQACVDVHHFEPNEITVKTVDNTVIVEGKHEERDDEHGSIQRHFVRKYVLPKEYDMNTVQSTLSSDGVLTIKAPLPAIKDSGERQVPITHTNMPAHLSIKSNKSKEGEEDGKAH
| Type | Start | End | Length |
| CDS |
7646 |
8166 |
521 |
| CDS |
8286 |
8331 |
46 |
| intron |
8167 |
8285 |
119 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADM13384 |
small heat shock protein 20 [Polypedilum vanderplanki] |
3e-50 |
| InterPro |
IPR001436 |
Alpha crystallin/Heat shock protein |
|
| InterPro |
IPR002068 |
Heat shock protein Hsp20 |
|
| InterPro |
IPR008978 |
HSP20-like chaperone |
|
| Pfam |
PF07873.6 |
YabP family |
0.062 |
| Pfam |
PF00011.16 |
Hsp20/alpha crystallin family |
1e-25 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0001225 |
| P. vanderplanki |
Pv.08675 |
| D. melanogaster |
FBgn0001224 |
| P. vanderplanki |
Pv.12871 |
| P. vanderplanki |
Pv.08674 |
| D. melanogaster |
FBgn0001226 |