MidgeBase gene description page [Pn.03752]
Outline
| Gene ID | Pn.03752 |
| Type | Protein coding gene |
| Scaffold | PnScaf3094 |
| Start | 25989 |
| End | 29050 |
| Direction | + |
Sequence
Transcript: 2529 (bp)
ATGTCAGAATCGAGTAAAACCCCGAGACGCGAGGAGGAGGATGATCGCAGAACATCAACCGACACTCCGATGAGAAACCCGCCGTCGGTCTCTTCTGGCCGTACACCCCTGCATGAGGGTTCTGATGCATTTTCTCTTCCCGCATCAGCAACGCCGAGACACATGAATGCATCTGAGTTCGACATCAATTCACCTCTCAACTACGGAACTCCGAGCTCTATCGGCTCTATTCGAACGCCGCACAGTGGCATCCAAAATACGCCACTTAAGCTGCGTCCTGATATCAGGATCGACAAGCGCGTGCGACAAGTGGCCGTTAATCAACTTGAAACGATAACCGAGGTTGATTCTCAGTCTGAAAGCGGCACATCGCACACTCAGGCTCAGCTCATGGTTTGGGGCACAAACGTGGTTATAAGCGAGTGTAAAAACAAATTTAGACTCTTTTTACAACGCTACATTGATCCGGAAGCTGAGCAGGATGAAGTTGAAGAGGGAATGAATCTCAATGAACCTCTGTACATGCAGAAGCTGGACGAGGTCAATTCGCTTGAAGAGCCATTCTTGAACGTTAATTGTGCGCATTTGAAAATGTTTGACGAGCAACTGTATAACCAACTAATTTGCTATCCACAAGAAGTTATTCCTGCCTTCGACATGGCTACGAATGAAATTTTCTTCGAAAAATACCCGGCAGCTGTGCTCGAGCACCAGATTCAAGTACGCCCTTTCAATGCTGAACAAACTCGAAACATGCGAGCATTGAATCCCGAGGATATTGATCAATTGATTTCAATAAGTGGCATGGTAATTCGTTGCTCCAACATCATCCCAGAGATGCGCGAAGCATTTTTCAAATGCATCGTCTGCTCCTTCACGACAACCGTCGAACTCGATCGAGGTCGCATTGAAGAGCCTAATCTGTGTGCACACTGCAACACAAACCACTGCTTCCAGTTGGTACACAATCGTTCGCACTTCACGGATAAACAGCTGATTAAGCTGCAAGAGTCGCAAGAAGACATGGCTGCAGGCCAGACACCACACAACATTCTCATGTTTGCCTACAATGATTTAGTCGATAAAGTTCAGCCGGGTGATCGTATCACAGTTACGGGTATCTATCGCGCCATCCCAATTCAGGATAATCCGCGTCAACGCACAGTTTCGTCCGTTTACAAGACACACATTGATGTTGTGCATTTCCGAAAGTTGGATAAAAAACGATTATATGTGTCGGAGGAAGGAAAAGAACATTTGTTTTCGCCCGAGCGCATTGAGCTCATGCACACATTGGCGCAAAAGCCAGACGTCTACGATCGATTAGCTCGCACAATCGCTCCATCCATCTACGAAAATCTCGACATCAAGAAGGGTATTTTACTCCAGCTTTTTGGCGGCACAAAGAAAAAACATTCTGCAGGCGGTCGTCAGAGTTTCCGTTCAGAAATACACATCTTGCTTTGCGGTGATCCGGGTACATCTAAATCTCAGCTACTTCAATACGTATTTAATTTGATTCCACGCTCTCAGTATACCTCGGGAAAAGGCTCTAGTGCTGTAGGTCTCACAGCTTACGTCACGCGAGATCCCGATACGCGCCAACTGACACTGCAAACTGGATCTCTTGTCCTGGCCGACAATGGCATCTGCTGTATTGATGAATTTGATAAAATGAGCGACGCTACTCGCAGTGTATTGCACGAAGTTATGGAGCAGTCAACCTTGAGTATTGCGAAGGCGGGAATAATTTGTCAACTTAATGCTAGAACATCAATTCTGGCATCGTGCAATCCATCCGAGTCGCAATGGAACAAGAACAAAACAATTATCGAAAACGTCAATTTGCCGCACACTCTAATGAGTCGCTTTGATTTGATTTTCCTGATTTTGGATCCTCAAGACGAGCTCTTCGACAAGCGTTTGGCATCACATTTGGTTTCACTTTATTATGCGGGAAAGGCGGAAGACGAGGATTCCCTCTTTGATATGGGTGTTTTAAGAGATTACATAGCGTATGCACGTGAGCATGTTCATCCAAAATTAAGCGACGAGGCACAGCAAAGACTGATTCAAGCATATGTCGATATGCGTAAGATTGGCTCGGGTCGTGGACAAATTTCAGCATATCCGCGCCAACTTGAAAGCTTGATTCGTCTTGCTGAAGCACACGCTAAAATTAGATTAAGCCAAACAGTGGATAACGTTGACGTTGAGGAAGCGTGGCGTTTGCATAGAGAAGCCTTGAAACAATCTGCGACAGATCCGCTCTCTGGAAAAATTGATGTCGGTATTCTAACGACGGGATTATCAGCATCGGCAAGAAAGAAGCGTGCAGAATTAATTGCTTTCATCAAGGACAACTTGAAAAAGAAAAACAAAACTAAAACGATTCCGTATCAAAAGTTTTTTACTGACATCAAAGAAGCTTCTCCCGTTTTGATTACGCGCGACCAGTTCGAGGATGCACTGAAAGAGTTGCAAGACGATGGCGTTGTGAATGTTATGGGAACCACTATCCGTGTTTGC
Protein: 843 (aa)
MSESSKTPRREEEDDRRTSTDTPMRNPPSVSSGRTPLHEGSDAFSLPASATPRHMNASEFDINSPLNYGTPSSIGSIRTPHSGIQNTPLKLRPDIRIDKRVRQVAVNQLETITEVDSQSESGTSHTQAQLMVWGTNVVISECKNKFRLFLQRYIDPEAEQDEVEEGMNLNEPLYMQKLDEVNSLEEPFLNVNCAHLKMFDEQLYNQLICYPQEVIPAFDMATNEIFFEKYPAAVLEHQIQVRPFNAEQTRNMRALNPEDIDQLISISGMVIRCSNIIPEMREAFFKCIVCSFTTTVELDRGRIEEPNLCAHCNTNHCFQLVHNRSHFTDKQLIKLQESQEDMAAGQTPHNILMFAYNDLVDKVQPGDRITVTGIYRAIPIQDNPRQRTVSSVYKTHIDVVHFRKLDKKRLYVSEEGKEHLFSPERIELMHTLAQKPDVYDRLARTIAPSIYENLDIKKGILLQLFGGTKKKHSAGGRQSFRSEIHILLCGDPGTSKSQLLQYVFNLIPRSQYTSGKGSSAVGLTAYVTRDPDTRQLTLQTGSLVLADNGICCIDEFDKMSDATRSVLHEVMEQSTLSIAKAGIICQLNARTSILASCNPSESQWNKNKTIIENVNLPHTLMSRFDLIFLILDPQDELFDKRLASHLVSLYYAGKAEDEDSLFDMGVLRDYIAYAREHVHPKLSDEAQQRLIQAYVDMRKIGSGRGQISAYPRQLESLIRLAEAHAKIRLSQTVDNVDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSASARKKRAELIAFIKDNLKKKNKTKTIPYQKFFTDIKEASPVLITRDQFEDALKELQDDGVVNVMGTTIRVC
| Type | Start | End | Length |
| CDS |
25989 |
26031 |
43 |
| CDS |
26087 |
27511 |
1425 |
| CDS |
27624 |
28141 |
518 |
| CDS |
28346 |
28493 |
148 |
| CDS |
28561 |
28865 |
305 |
| CDS |
28958 |
29047 |
90 |
| intron |
26032 |
26086 |
55 |
| intron |
27512 |
27623 |
112 |
| intron |
28142 |
28345 |
204 |
| intron |
28494 |
28560 |
67 |
| intron |
28866 |
28957 |
92 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002032754 |
GM20786 [Drosophila sechellia] gb|EDW46767.1| GM20786 [Drosophila sechellia] |
0.0 |
| InterPro |
IPR012340 |
Nucleic acid-binding, OB-fold |
|
| InterPro |
IPR016027 |
Nucleic acid-binding, OB-fold-like |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR001208 |
Mini-chromosome maintenance, DNA-dependent ATPase |
|
| InterPro |
IPR018525 |
Mini-chromosome maintenance, conserved site |
|
| InterPro |
IPR008047 |
Mini-chromosome maintenance complex protein 4 |
|
| Gene Ontology(BP) |
GO:0006260 |
DNA replication |
|
| Gene Ontology(BP) |
GO:0006270 |
DNA-dependent DNA replication initiation |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Pfam |
PF13567.1 |
Domain of unknown function (DUF4131) |
0.051 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
1.2e-07 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.00068 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
2.4e-08 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
0.069 |
| Pfam |
PF00493.18 |
MCM2/3/5 family |
5.4e-133 |
| Pfam |
PF07726.6 |
ATPase family associated with various cellular activities (AAA) |
0.00013 |
| Pfam |
PF13401.1 |
AAA domain |
0.073 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB20008-PA |
| P. humanus |
PHUM177450-PA |
| H. sapiens |
ENSP00000430194 |
| M. musculus |
ENSMUSG00000022673 |
| D. melanogaster |
FBgn0015929 |
| T. castaneum |
TC009571 |
| B. mori |
BGIBMGA002762-TA |
| A. aegypti |
AAEL010086 |
| A. gambiae |
AGAP004956 |
| A. aegypti |
AAEL014524 |
| D. plexippus |
DPOGS210471PA |
| H. sapiens |
ENSP00000380038 |
| H. sapiens |
ENSP00000262105 |
| H. melpomene |
HMEL012776-PA |
| P. vanderplanki |
Pv.04327 |
| B. mori |
BGIBMGA002763-TA |
| C. quinquefasciatus |
CPIJ010887 |
| N. vitripennis |
NV10563-PA |
| S. invicta |
SI2.2.0_01806 |
| H. sapiens |
ENSP00000427875 |