MidgeBase gene description page [Pn.03742]
Outline
| Gene ID | Pn.03742 |
| Type | Protein coding gene |
| Scaffold | PnScaf3064 |
| Start | 48318 |
| End | 50583 |
| Direction | + |
Sequence
Transcript: 1443 (bp)
ATGCCATTTTCAAAAATGTCGACGAGTCTTTATATTAAAAATGCATGCGTTGTCAACTTCGACTCAATACAAGAAAATGTCGCAATTTTCGTTGAGAACGGCGTGATCAAGTTTATTGGTGTCGAGAATGATCTACTAGTCCCAGCTGGAGTTGAAGTGATCGATGCGAGTGGAAAGTACGTGATTCCCGGTGGCATCGATCCTCACACTCATTTTGAGCTGGAATTTGGCAACACAGTTGCTGTCGATGACTTTTACCAAGGAACCGTGGCTGCCGTTGCAGGTGGAACGACTACAGTTATTGACTTTGTCATCCCGAAAAAGGGACAGTCAATATTGGAGGCTTACGACAGCTGGAGATCGAGAGCTGACGCGAAAGTCGTATGCGACTATGGCTTGCACTGTGCCATAACATGGTGGAGCCCTGAAGTGAGCAATGACATGGGAACCCTGTGCAAGGAAAAGGGAATCAGCTCTTTCAAAATGTTCATGGCCTACAAAGGTCTCTTCATGCTCGATGACGGTGAACTCTATGAGACGTTTGAGCGCTGTCGCGATCTTGGCGCCTTAGCTCAAGTTCACGCCGAGAACGGTGATATCATTGCGAAGAATACTGTTAAGTTACTCGAGAGCGGTGTCAAGGGACCCGAGGGCCATCAGCTGTCCCGAACCGAGGATGTTGAAGCAGAAGCCACAAATCGTGCATGCGTTATCGCTAACCAGACAAAGTGTCCGCTCTACGTCGTACATGTCATGTCGATTTCGGCTGCCGAGGAAGTGGCACGAGCTCGCGAACGCTGGGGAAAAAACTTTATTTTTGGCGAGACCTTGGCGGCCGCTTTAGGTGCCAGTGGCGAGGAGTACTACAACAAGTGCTGGCATCATGCTGCGTGCCACGTTCTGTCGCCGCCGCTGAGGCCCAGGAAAGAAACTCGAGAGGTCCTCATGAGAATGCTGGCCCGTGATGAGCTCCAGTCAACAGGCTCTGATAACTGCACTTTTAACAAAAAACAAAAAGAGCTGGGTCTCAACGACTTTTCGAAAATTCCCAACGGCGTGAACGGAGTTGAGGATCGAATGAGTGTCATCTGGGAGAGAGGCGTTCATGCCGGTGTTATCGACCCAAAGAGATTTGTCGCCGTCACATCATCTAACGCAGCGAAGATCTTCAATCTGTACCCGCGAAAGGGATCAATAACGGTCGGCGCGGACGCCGACATCGTCATTTGGAATCCGCATACAACTCGCACAATTTCGAACAAAACACACCATCACGCATGCGACTTTAACATCTTTGAAGGAATGACGTGCCATGGCGTGCCTGAAATAGTGATTGTTGGTGGAAAGGTTTGTGTGCACAACGGAAAAATAAATGTTAAAGCCGGCTCGGGCAGATTTTTGCCTAGGGGAGTTTTCAACCCCTACATTTATGTATCAAAAAAA
Protein: 481 (aa)
MPFSKMSTSLYIKNACVVNFDSIQENVAIFVENGVIKFIGVENDLLVPAGVEVIDASGKYVIPGGIDPHTHFELEFGNTVAVDDFYQGTVAAVAGGTTTVIDFVIPKKGQSILEAYDSWRSRADAKVVCDYGLHCAITWWSPEVSNDMGTLCKEKGISSFKMFMAYKGLFMLDDGELYETFERCRDLGALAQVHAENGDIIAKNTVKLLESGVKGPEGHQLSRTEDVEAEATNRACVIANQTKCPLYVVHVMSISAAEEVARARERWGKNFIFGETLAAALGASGEEYYNKCWHHAACHVLSPPLRPRKETREVLMRMLARDELQSTGSDNCTFNKKQKELGLNDFSKIPNGVNGVEDRMSVIWERGVHAGVIDPKRFVAVTSSNAAKIFNLYPRKGSITVGADADIVIWNPHTTRTISNKTHHHACDFNIFEGMTCHGVPEIVIVGGKVCVHNGKINVKAGSGRFLPRGVFNPYIYVSKK
| Type | Start | End | Length |
| CDS |
48318 |
48329 |
12 |
| CDS |
48454 |
48840 |
387 |
| CDS |
49050 |
49798 |
749 |
| CDS |
50286 |
50580 |
295 |
| intron |
48330 |
48453 |
124 |
| intron |
48841 |
49049 |
209 |
| intron |
49799 |
50285 |
487 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002049482 |
GJ21611 [Drosophila virilis] gb|EDW60675.1| GJ21611 [Drosophila virilis] |
0.0 |
| InterPro |
IPR011778 |
Hydantoinase/dihydropyrimidinase |
|
| InterPro |
IPR006680 |
Amidohydrolase 1 |
|
| InterPro |
IPR011059 |
Metal-dependent hydrolase, composite domain |
|
| Gene Ontology(BP) |
GO:0006208 |
pyrimidine base catabolic process |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0016812 |
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0016810 |
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
|
| Pfam |
PF13147.1 |
Amidohydrolase |
1.8e-16 |
| Pfam |
PF04909.9 |
Amidohydrolase |
0.0012 |
| Pfam |
PF01979.15 |
Amidohydrolase family |
5.8e-23 |
| Pfam |
PF07969.6 |
Amidohydrolase family |
4.8e-09 |
| Pfam |
PF13594.1 |
Amidohydrolase |
7.6e-15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.03741 |
| Pn.05347 |
| Pn.04037 |
| Pn.03459 |
| Pn.15973 |
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000025478 |
| H. sapiens |
ENSP00000441150 |
| C. quinquefasciatus |
CPIJ017588 |
| S. invicta |
SI2.2.0_15600 |
| H. sapiens |
ENSP00000425742 |
| B. mori |
BGIBMGA006519-TA |
| H. sapiens |
ENSP00000321606 |
| H. melpomene |
HMEL013573-PA |
| D. plexippus |
DPOGS208592PA |
| A. mellifera |
GB14127-PA |
| S. invicta |
SI2.2.0_13453 |
| C. quinquefasciatus |
CPIJ007579 |
| H. sapiens |
ENSP00000357616 |
| A. aegypti |
AAEL006014 |
| B. mori |
BGIBMGA005717-TA |
| N. vitripennis |
NV16771-PA |
| M. musculus |
ENSMUSG00000022048 |
| P. vanderplanki |
Pv.08016 |
| D. melanogaster |
FBgn0023023 |
| P. humanus |
PHUM513380-PA |
| H. sapiens |
ENSP00000381526 |
| N. vitripennis |
NV14320-PA |
| A. gambiae |
AGAP010735 |
| D. plexippus |
DPOGS204120PA |
| A. gambiae |
AGAP013327 |
| H. sapiens |
ENSP00000288699 |
| A. aegypti |
AAEL015354 |
| P. humanus |
PHUM103110-PA |
| C. quinquefasciatus |
CPIJ010151 |
| A. aegypti |
AAEL007633 |
| M. musculus |
ENSMUSG00000029168 |
| H. sapiens |
ENSP00000339850 |
| H. sapiens |
ENSP00000428909 |
| A. gambiae |
AGAP010899 |
| H. sapiens |
ENSP00000431117 |
| H. sapiens |
ENSP00000385549 |
| D. plexippus |
DPOGS205965PA |
| A. gambiae |
AGAP013282 |
| A. gambiae |
AGAP003124 |
| D. melanogaster |
FBgn0004577 |
| P. vanderplanki |
Pv.17089 |
| T. castaneum |
TC010876 |
| H. sapiens |
ENSP00000343690 |
| P. vanderplanki |
Pv.03908 |
| T. castaneum |
TC000175 |
| B. mori |
BGIBMGA006520-TA |
| H. sapiens |
ENSP00000427985 |
| H. sapiens |
ENSP00000276651 |
| A. mellifera |
GB10387-PA |
| H. sapiens |
ENSP00000380987 |
| A. gambiae |
AGAP010810 |
| A. gambiae |
AGAP010734 |
| N. vitripennis |
NV14319-PA |
| C. quinquefasciatus |
CPIJ000622 |
| H. sapiens |
ENSP00000357618 |
| M. musculus |
ENSMUSG00000022304 |
| P. vanderplanki |
Pv.03127 |
| H. sapiens |
ENSP00000413075 |
| H. melpomene |
HMEL016586-PA |
| M. musculus |
ENSMUSG00000029121 |
| H. sapiens |
ENSP00000309539 |