MidgeBase gene description page [Pn.03680]
Outline
| Gene ID | Pn.03680 |
| Type | Protein coding gene |
| Scaffold | PnScaf2996 |
| Start | 496 |
| End | 2209 |
| Direction | + |
Sequence
Transcript: 1062 (bp)
ATGGAGGGAACAAAAATAACTCTCTCAATCATTTTAATGGGTCTCTTAGCAAGTCTCTCAAGAGCGCAGCAGGCAACCTGTGATTTTGGCTTCGCATATGTTGACAGCACCTGGCTGTACGCATGCAATCTTCGCGTTTTTGACACGATCGTCGAGGAGATTACTGAGATTACGGGCGAGCACATGGCCGGTCAAACCGACGCAGATGTCCGAGATATCTTCTTCATGGGTGGAACAACTCCAACGTTTCCAAGACTCATTTGCTCCCGCTTCTCACAGACTACGCACATTACCTTCAAATTCGCTCGTTTGCAGCACCTTCCCGAGGACTCGTTCAGCAGCTGCGAGAACGCTCAATACATTACCTTGATGGGCAATCGAATCACCTCGTTGCCGCCCAAAATTCTCGCCAACAATCGAAACATTATTTTTTTCAACATTCACAGCAACAACCTGACTTCGATCGATGAAGAAACGTTCGCAGATTCGACATCCTTGAATGTTTTGGACCTAGGCCGAAATCACATAGAGGAAATTCCCGTCAACTTGCTGCGGAACCTTCAAAATTTAACTAAAATCGGACTCGATAACCTCGGACTCACCGCCATCAATCCACAGTGGTTCGCCAACAACCCGAATTTGGTCGAACTTCATCTCGATAGCAACGAAATCACCTCGGTGCAGGCGAGCGATTTCGCGACACTCCGCTCGCTCGTTTACTTGAGTCTCAGCAGCAATCCGCTCGGAACTTTCTCGCGCGAAGCCTTTCTGGATCTCAAGAACCTTCGCGTGCTCAACATCGGAAACATCGGTTTGACCGCGTTGACATCCGGCATGTTCGAAGGCCTTTCGCAGCTTCTAGGCATCGACTTTTATTTCAACAACATCAGCACGATCGAGGACGGTGCCTTCTGGGGATTGACAGGTCTTGAGTTTCTTCTCCTCGACACGACAGATATTCGCGAGCTCCACACGAATTCCTTCGTCGGTCTGCCGAATCTCCGGCTGTTAAATCTGGATTTCAACAACTTGCAGGACTTTCCAGTTGGCATGCCGAAAACT
Protein: 354 (aa)
MEGTKITLSIILMGLLASLSRAQQATCDFGFAYVDSTWLYACNLRVFDTIVEEITEITGEHMAGQTDADVRDIFFMGGTTPTFPRLICSRFSQTTHITFKFARLQHLPEDSFSSCENAQYITLMGNRITSLPPKILANNRNIIFFNIHSNNLTSIDEETFADSTSLNVLDLGRNHIEEIPVNLLRNLQNLTKIGLDNLGLTAINPQWFANNPNLVELHLDSNEITSVQASDFATLRSLVYLSLSSNPLGTFSREAFLDLKNLRVLNIGNIGLTALTSGMFEGLSQLLGIDFYFNNISTIEDGAFWGLTGLEFLLLDTTDIRELHTNSFVGLPNLRLLNLDFNNLQDFPVGMPKT
| Type | Start | End | Length |
| CDS |
496 |
682 |
187 |
| CDS |
1175 |
2037 |
863 |
| CDS |
2195 |
2206 |
12 |
| intron |
683 |
1174 |
492 |
| intron |
2038 |
2194 |
157 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFW41510 |
predicted protein [Capsaspora owczarzaki ATCC 30864] |
5e-26 |
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
3.3e-49 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
7.6e-25 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
4.3e-08 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
4.2e-14 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
1.1e-21 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
3.2e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes