MidgeBase gene description page [Pn.03645]
Outline
| Gene ID | Pn.03645 |
| Type | Protein coding gene |
| Scaffold | PnScaf2984 |
| Start | 30867 |
| End | 32219 |
| Direction | - |
Sequence
Transcript: 1350 (bp)
ATGTCGTTTAAGCGCACAGCAGGAACAGAATTAAATCACGATAACTGGAACGAGGAGGAGGAGACTGAGGAAAAGGGAGAGTTTAAGAAGGCAAGTGACGACGTTCTTGCAAAAAGAGTTCGAAAAGTCGCAAAAAGACGAGGAGTCGCAGGCGAAGGCGAAAGTACACCAGCCATCTCAAACCCGTTCAGCGGTTTCGGAGGATTCGGCACGAAACCAAGCGTTGCTGCATCAACTCCAATCAGTGCTGCATCGACTCCCTTCAGTTTTCTCTCAAAAATTCCCTCGGTAGGATCATTGGCGGCATCATCAACAACAACAACATTCACAACAGCAGCGACAAAAAAACCAAATGGCGAGTCAATAAGTACTCAATCAACTTCTGGTGAATGCATAACTAATGGCAGCAGCAGCAACAACAATATGGAATACTTCAGTCAAATTAAGTCACTGAATGTTGCATTTATCGGATGGATAAAAGAAAAGGTTGATGAAAATCCGCTTTGTGATTTATCGCCGATCTTCAAAGACTATGAAAATTACATGAAGGACATCAGTAAAATAAAAAAAGAAGCTAAACCAGATGATGCAGAAAAGAAGGAAGAAGAGAAACCAAAACCGACTGCTGCACCTGCTACAAATTTCACCTTCGGAAAGCCGGCAAGCACAACGCCGTCAAGTCCGCCCTCGACGAACGTTTTCGCATCTGTCAACACATCGTCTATTTTCTCATCGACAGCTAAGCCTGACGCGCCAAAAGAAACATCACCAGCAAAACCAGCGACCGAGAACAAAGGCTTTAGTTTTGGAATGGGACAACCGACTGCTCCGCCAGCCTTTTCGTTTGGTCTGCAGAAACCTGCAGCTGGTGCCTCGATTTTCGGCAGCTCTTCATCATTTTCGTTCGGAAATGTCACTCAAACAAAGTCCGAGACAGAAATCAAGCCGGCCGAGGCGGAAGGAGAGGGTGAGACCGAGGATGAGCCGCCCAAGAATGAATTCGTTCCGGTCGTCGAAGAAGACAGCTTGTTTTCCAAGCGATGCAAGGTGTTCGTAAAGTCGGGCAATGATTATGCAGATCGAGGCGTAGGAACCTTGTTCTTGAAGAAGGTGGACGACAAAGTGCAATTGGTTGTGCGCGCCGATACGAATCTTGGAAACATCCTGCTGAACATCATCCTCCAAGAGGGTCTTCCGACATCTCGATTAGGCAAGAATAACGTAATGATTGTCTGTGTTCCGATGCCCGACAGCAAACCTCCGCCGATTCCCGTTCTTGTTCGTGTGAAAACAGCCGAGGAGGCCGACGAGTTGCTTTCGATTTTAGAAAAGTACAAAAAAGGCGCCGAT
Protein: 450 (aa)
MSFKRTAGTELNHDNWNEEEETEEKGEFKKASDDVLAKRVRKVAKRRGVAGEGESTPAISNPFSGFGGFGTKPSVAASTPISAASTPFSFLSKIPSVGSLAASSTTTTFTTAATKKPNGESISTQSTSGECITNGSSSNNNMEYFSQIKSLNVAFIGWIKEKVDENPLCDLSPIFKDYENYMKDISKIKKEAKPDDAEKKEEEKPKPTAAPATNFTFGKPASTTPSSPPSTNVFASVNTSSIFSSTAKPDAPKETSPAKPATENKGFSFGMGQPTAPPAFSFGLQKPAAGASIFGSSSSFSFGNVTQTKSETEIKPAEAEGEGETEDEPPKNEFVPVVEEDSLFSKRCKVFVKSGNDYADRGVGTLFLKKVDDKVQLVVRADTNLGNILLNIILQEGLPTSRLGKNNVMIVCVPMPDSKPPPIPVLVRVKTAEEADELLSILEKYKKGAD
| Type | Start | End | Length |
| CDS |
30870 |
32219 |
1350 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651179 |
nucleoporin [Aedes aegypti] gb|EAT42874.1| nucleoporin [Aedes aegypti] |
2e-74 |
| InterPro |
IPR000156 |
Ran binding domain |
|
| InterPro |
IPR011993 |
Pleckstrin homology-like domain |
|
| InterPro |
IPR015007 |
Nuclear pore complex, NUP2/50/61 |
|
| Gene Ontology(BP) |
GO:0046907 |
intracellular transport |
|
| Gene Ontology(CC) |
GO:0005643 |
nuclear pore |
|
| Pfam |
PF00638.13 |
RanBP1 domain |
4.2e-10 |
| Pfam |
PF08911.6 |
NUP50 (Nucleoporin 50 kDa) |
3.2e-21 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000385555 |
| H. melpomene |
HMEL006844-PA |
| A. aegypti |
AAEL005635 |
| P. vanderplanki |
Pv.09519 |
| C. quinquefasciatus |
CPIJ012737 |
| H. sapiens |
ENSP00000345895 |
| N. vitripennis |
NV14438-PA |
| H. sapiens |
ENSP00000406928 |
| H. sapiens |
ENSP00000379403 |
| D. plexippus |
DPOGS211901PA |
| P. humanus |
PHUM205450-PA |
| T. castaneum |
TC007383 |
| S. invicta |
SI2.2.0_05128 |
| M. musculus |
ENSMUSG00000016619 |
| A. mellifera |
GB18194-PA |
| D. melanogaster |
FBgn0033264 |
| B. mori |
BGIBMGA000995-TA |