MidgeBase gene description page [Pn.03619]
Outline
| Gene ID | Pn.03619 |
| Type | Protein coding gene |
| Scaffold | PnScaf2980 |
| Start | 42205 |
| End | 44233 |
| Direction | + |
Sequence
Transcript: 1611 (bp)
ATGAACAGCAATAAAGCAGAGCTCAGCCGATGCTCCTCGATATCGACAGTCGACAGCCTCTATGCCGCTCAAATCGTGCAAAAATTCGAAAATTCCCAGCAACTGCAGACAGACTCGGCACAGCCGCCTTCGATGCGAAACAATCTGACGTTTGACAATAGCGAGGGAATTCATGTCGGCGATGTTATCAACTACTTCTACAACTCGTCATCTCTCGAAGTCTCGAGCAGCGTCAAATCAAAACCAGAATTTTCGACCGAACCGCGAAAATACATCACAGTAATCGCGGTGATAAGCCTAATTATTGTTGCCTCAACAGTTGGCGGCGTTTTGTTTCTGCTCCTCAATAAGAGCGCAGAGCGTGACATTGAAATCACAACAACTGTTACAGCAACAACAACAACTGTTTCTGCAATCACAACTACAACAACAAAAGCGATAATAACGACAGCTGAAGCTCCAATGACGACAGAGCTGGCATCGGTGACTCAAACGACTGCGTCACTTTCTCCGCCGACGACGAGCTCCAGCCTTATCACGCTGCCATCAATTATCGCTCTCGACTCGTACCGGAGCAGAGACGAGTGGAATGCTCTGCCGCCAAAAGCCACGCGCGCGCTTGAACTGCCGATTCGGCGAATAATTATCACCCACACAGGTGGCGAGGGCTGCAGCAGTGAAGACGAGTGCACACGGATGATAAGGGAGCTGCAGCAAGCGTCCGCTCATCTCGACGACATTCCCTTCAACTTTCTCATCGGGAACGACTCGAAAGTCTACGAAGGTCGCGGTTTTGAACATCGAGGCGAGCACACGGCAAATCCCGACGCCACCGAGTACGACAGCATTGGAATTTGCGTGGCCTTCATTGGAAATTACGAGCACGAGGAGCTCAGCGAGGCTCAGCTCGCAGTTTTCGAAGAATTTTTGGGGTATTTTGTTGACAACAAAATTATCGCTGAAAATTACACAATTTTCTCGCGCGATCAACTGGTGAGGAGCGAACGACCCGCCGACAAACTAAATGAAATAATTCGCGGGTTGAAGGGCTTCAGACAATTGCAGAAAATTTATCATCGCGACGAGTGGAGCGCCGAGAGTGCGAGAGCAATTCAGCGTTTTAATCACACAGTAACTTGGGCACTTGTCACTGGAAACTTCACGCCGAAGTGCTTCAACTTTTCGAACTGCGCCGAGGATGTGTGGCAGCTGCAGCAAAATGCCTTCGAGATGAACCTCACAGACATTCCCTACGCATTTATGGTCGGCGGCGAGGGATTGATTTTTGAAGGCAGAGGCTGGGACATAAAAGGCGAGCACACAGAGGGCTACGACGACCAAACAATCGCCATTCACATCATCGACGACAACGTAATTAAGCCGCCAAACGACAGCGTGATGAATGCCATCGAAAGTCTTCTCGAGGATGGTCTGCTGCTCGGGAAGTTGACAGAAGATTACTGGCTGAATGCACGGCAGGAGTTGGGATTGAAATTCCGAGGACCCGGCTACTCCGTCGTCAGAATCATCATGCTGTGGAAGCACTGGCACTTCATTCTGAAGTCAAAAGACTCGGAAAAGTGGAGAGAAACAATCGAGAGAGGAAAAGTT
Protein: 537 (aa)
MNSNKAELSRCSSISTVDSLYAAQIVQKFENSQQLQTDSAQPPSMRNNLTFDNSEGIHVGDVINYFYNSSSLEVSSSVKSKPEFSTEPRKYITVIAVISLIIVASTVGGVLFLLLNKSAERDIEITTTVTATTTTVSAITTTTTKAIITTAEAPMTTELASVTQTTASLSPPTTSSSLITLPSIIALDSYRSRDEWNALPPKATRALELPIRRIIITHTGGEGCSSEDECTRMIRELQQASAHLDDIPFNFLIGNDSKVYEGRGFEHRGEHTANPDATEYDSIGICVAFIGNYEHEELSEAQLAVFEEFLGYFVDNKIIAENYTIFSRDQLVRSERPADKLNEIIRGLKGFRQLQKIYHRDEWSAESARAIQRFNHTVTWALVTGNFTPKCFNFSNCAEDVWQLQQNAFEMNLTDIPYAFMVGGEGLIFEGRGWDIKGEHTEGYDDQTIAIHIIDDNVIKPPNDSVMNAIESLLEDGLLLGKLTEDYWLNARQELGLKFRGPGYSVVRIIMLWKHWHFILKSKDSEKWRETIERGKV
| Type | Start | End | Length |
| CDS |
42205 |
42424 |
220 |
| CDS |
42474 |
43313 |
840 |
| CDS |
43378 |
43499 |
122 |
| CDS |
43744 |
43837 |
94 |
| CDS |
43896 |
44230 |
335 |
| intron |
42425 |
42473 |
49 |
| intron |
43314 |
43377 |
64 |
| intron |
43500 |
43743 |
244 |
| intron |
43838 |
43895 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002810214 |
PREDICTED: peptidoglycan recognition protein 3-like [Pongo abelii] |
1e-33 |
| InterPro |
IPR015510 |
Peptidoglycan recognition protein |
|
| InterPro |
IPR002502 |
N-acetylmuramoyl-L-alanine amidase domain |
|
| InterPro |
IPR006619 |
Peptidoglycan recognition protein family domain, metazoa/bacteria |
|
| Gene Ontology(BP) |
GO:0009253 |
peptidoglycan catabolic process |
|
| Gene Ontology(MF) |
GO:0008745 |
N-acetylmuramoyl-L-alanine amidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF01510.20 |
N-acetylmuramoyl-L-alanine amidase |
1.5e-23 |
| Pfam |
PF13908.1 |
Wnt and FGF inhibitory regulator |
0.51 |
| Pfam |
PF01456.12 |
Mucin-like glycoprotein |
0.14 |
| Pfam |
PF13548.1 |
Domain of unknown function (DUF4126) |
4.8 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM581030-PA |
| P. vanderplanki |
Pv.13366 |